463

Christina Theodoris

ctheodoris

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Recent Activity

new activity about 3 hours ago

ctheodoris/Geneformer:Did something happen to the token_dictionary_gc95M.pkl?

new activity about 9 hours ago

ctheodoris/Geneformer:Input to Model

new activity about 9 hours ago

ctheodoris/Geneformer:AssertionError of extracts embedding from input data

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ctheodoris's activity

New activity in ctheodoris/Geneformer about 3 hours ago

Did something happen to the token_dictionary_gc95M.pkl?

#477 opened about 3 hours ago by

ag2022

New activity in ctheodoris/Geneformer about 9 hours ago

Input to Model

#476 opened about 17 hours ago by

shakeel604

AssertionError of extracts embedding from input data

#435 opened 3 months ago by

yuexiafx

New activity in ctheodoris/Geneformer 2 days ago

Fix how mappings and train and val data are returned

#473 opened 3 days ago by

hchen725

New activity in ctheodoris/Geneformer 6 days ago

"dedup" result errors when tokenizing

#471 opened 14 days ago by

ZYSK-huggingface

Genformer doesn't use all tokens in provided token dicts

#472 opened 8 days ago by

avelezarce

New activity in ctheodoris/Geneformer 19 days ago

Upload gene_name_id_dict_gc95M.pkl

#470 opened 19 days ago by

hchen725

New activity in ctheodoris/Geneformer 23 days ago

usage of bulk RNA-Seq?

#32 opened over 1 year ago by

lilei139334

Way to extract feature importance

#468 opened 23 days ago by

avazhai

New activity in ctheodoris/Geneformer about 2 months ago

recalculate gene_median_dictionary for continual training on human organoids datasets?

#464 opened about 2 months ago by

Jayce77

Fine tuning questions

#462 opened about 2 months ago by

ZYSK-huggingface

How Were Input Data and Confusion Matrices Generated for Gene Classification Models in Extended Data Figure 7 a, d, e?

#463 opened about 2 months ago by

pragmaticman

Multiprocessing in InSilicoPerturber

#369 opened 7 months ago by

nlapier2

IndexError: index out of range in self

#447 opened 3 months ago by

kennethho04

RuntimeError: CUDA error: device-side assert triggered during Geneformer validation

#411 opened 5 months ago by

fs00431

Add checks for custom attributes and n_counts prior to sum ensembl id

#461 opened about 2 months ago by

hchen725

Can I fine tune geneformer on mRNA expression data?

#460 opened about 2 months ago by

Sheldor7701

The disturbed task reported an error

#443 opened 3 months ago by

babykai

MTL Classifier - Discreptancy between train and validation mappings

#446 opened 3 months ago by

milos-micik

Raise error for train and validation mismatch

#459 opened about 2 months ago by

madhavanvenkatesh