Christina Theodoris

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New activity in ctheodoris/Geneformer about 3 hours ago

Did something happen to the token_dictionary_gc95M.pkl?

1

#477 opened about 3 hours ago by

ag2022

New activity in ctheodoris/Geneformer about 9 hours ago

Input to Model

1

#476 opened about 16 hours ago by

shakeel604

AssertionError of extracts embedding from input data

6

#435 opened 3 months ago by

yuexiafx

New activity in ctheodoris/Geneformer 2 days ago

Fix how mappings and train and val data are returned

#473 opened 3 days ago by

hchen725

New activity in ctheodoris/Geneformer 6 days ago

"dedup" result errors when tokenizing

1

#471 opened 14 days ago by

ZYSK-huggingface

Genformer doesn't use all tokens in provided token dicts

5

#472 opened 8 days ago by

avelezarce

New activity in ctheodoris/Geneformer 19 days ago

Upload gene_name_id_dict_gc95M.pkl

#470 opened 19 days ago by

hchen725

New activity in ctheodoris/Geneformer 23 days ago

usage of bulk RNA-Seq?

3

#32 opened over 1 year ago by

lilei139334

Way to extract feature importance

3

#468 opened 23 days ago by

avazhai

New activity in ctheodoris/Geneformer about 2 months ago

recalculate gene_median_dictionary for continual training on human organoids datasets?

1

#464 opened about 2 months ago by

Jayce77

Fine tuning questions

4

#462 opened about 2 months ago by

ZYSK-huggingface

How Were Input Data and Confusion Matrices Generated for Gene Classification Models in Extended Data Figure 7 a, d, e?

1

#463 opened about 2 months ago by

pragmaticman

Multiprocessing in InSilicoPerturber

7

#369 opened 7 months ago by

nlapier2

IndexError: index out of range in self

2

#447 opened 3 months ago by

kennethho04

RuntimeError: CUDA error: device-side assert triggered during Geneformer validation

2

#411 opened 5 months ago by

fs00431

Add checks for custom attributes and n_counts prior to sum ensembl id

#461 opened about 2 months ago by

hchen725

Can I fine tune geneformer on mRNA expression data?

2

#460 opened about 2 months ago by

Sheldor7701

updated a model about 2 months ago

ctheodoris/Geneformer

Fill-Mask • Updated 2 days ago • 742 • 211

New activity in ctheodoris/Geneformer about 2 months ago

The disturbed task reported an error

1

#443 opened 3 months ago by

babykai

MTL Classifier - Discreptancy between train and validation mappings

1

#446 opened 3 months ago by

milos-micik