id
stringlengths 7
7
| primary
stringlengths 20
1.66k
| protein_length
int64 20
1.66k
| class
stringclasses 7
values | fold
stringlengths 3
5
| super_family
stringlengths 5
8
| family
stringlengths 7
10
| description
stringlengths 54
193
|
|---|---|---|---|---|---|---|---|
d1dlwa_ | slfeqlggqaavqavtaqfyaniqadatvatffngidmpnqtnktaaflcaalggpnawtgrnlkevhanmgvsnaqfttvighlrsaltgagvaaalveqtvavaetvrgdvvtv | 116 | a | a.1 | a.1.1 | a.1.1.1 | d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]} |
d2gkma_ | gllsrlrkrepisiydkiggheaievvvedffvrvladdqlsaffsgtnmsrlkgkqveffaaalggpepytgapmkqvhqgrgitmhhfslvaghladaltaagvpsetiteilgviaplavdvts | 127 | a | a.1 | a.1.1 | a.1.1.1 | d2gkma_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]} |
d1ngka_ | ksfydavggaktfdaivsrfyaqvaedevlrrvypeddlagaeerlrmfleqywggprtyseqrghprlrmrhapfrislierdawlrcmhtavasidsetlddehrrelldylemaahslvnspf | 126 | a | a.1 | a.1.1 | a.1.1.1 | d1ngka_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]} |
d2bkma_ | eqwqtlyeaiggeetvaklveafyrrvaahpdlrpifpddltetahkqkqfltqylggpplytaehghpmlrarhlrfeitpkraeawlacmraamdeiglsgpareqfyhrlvltahhmvntpdhld | 128 | a | a.1 | a.1.1 | a.1.1.1 | d2bkma_ a.1.1.1 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]} |
d4i0va_ | aslyeklggaaavdlavekfygkvladervnrffvntdmakqkqhqkdfmtyafggtdrfpgrsmraahqdlvenagltdvhfdaiaenlvltlqelnvsqdlidevvtivgsvqhrndvlnr | 123 | a | a.1 | a.1.1 | a.1.1.1 | d4i0va_ a.1.1.1 (A:) automated matches {Synechococcus sp. [TaxId: 32049]} |
d1asha_ | anktrelcmkslehakvdtsnearqdgidlykhmfenypplrkyfksreeytaedvqndpffakqgqkillachvlcatyddretfnaytrelldrhardhvhmppevwtdfwklfeeylgkkttldeptkqawheigrefakeink | 147 | a | a.1 | a.1.1 | a.1.1.2 | d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm (Ascaris suum) [TaxId: 6253]} |
d2dc3a_ | eelseaerkavqamwarlyancedvgvailvrffvnfpsakqyfsqfkhmedplemerspqlrkhacrvmgalntvvenlhdpdkvssvlalvgkahalkhkvepvyfkilsgvilevvaeefasdfppetqrawaklrgliyshvtaaykevgwvqqvpnattppatlpss | 172 | a | a.1 | a.1.1 | a.1.1.2 | d2dc3a_ a.1.1.2 (A:) Cytoglobin {Human (Homo sapiens) [TaxId: 9606]} |
d4hswa_ | gfkqdiatirgdlrtyaqdiflaflnkypderryfknyvgksdqelksmakfgdhtekvfnlmmevadratdcvplasdantlvqmkqhsslttgnfekffvalveymrasgqsfdsqswdrfgknlvsalssagmk | 137 | a | a.1 | a.1.1 | a.1.1.2 | d4hswa_ a.1.1.2 (A:) Dehaloperoxidase {Amphitrite ornata [TaxId: 129555]} |
d1ecaa_ | lsadqistvqasfdkvkgdpvgilyavfkadpsimakftqfagkdlesikgtapfethanrivgffskiigelpnieadvntfvashkprgvthdqlnnfragfvsymkahtdfagaeaawgatldtffgmifskm | 136 | a | a.1 | a.1.1 | a.1.1.2 | d1ecaa_ a.1.1.2 (A:) Erythrocruorin {Midge (Chironomus thummi thummi), fraction III [TaxId: 7154]} |
d1x9fd_ | eclvteslkvklqwasafghahervafglelwrdiiddhpeikapfsrvrgdniyspefgahsqrvlsglditismldtpdmlaaqlahlkvqhvernlkpeffdiflkhllhvlgdrlgthfdfgawhdcvdqiidgik | 140 | a | a.1 | a.1.1 | a.1.1.2 | d1x9fd_ a.1.1.2 (D:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit D1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} |
d1x9fc_ | hehccseedhrivqkqwdilwrdtesskikigfgrllltklakdipevndlfkrvdiehaegpkfsahalrilngldlainllddppaldaaldhlahqhevregvqkahfkkfgeilatglpqvlddydalawksclkgiltkissrl | 149 | a | a.1 | a.1.1 | a.1.1.2 | d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} |
d1jl7a_ | glsaaqrqvvastwkdiagadngagvgkeclskfisahpemaavfgfsgasdpgvaelgakvlaqigvavshlgdegkmvaemkavgvrhkgygnkhikaeyfeplgasllsamehriggkmnaaakdawaaaygdisgalisglqs | 147 | a | a.1 | a.1.1 | a.1.1.2 | d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]} |
d1it2a_ | piidqgplptltdgdkkainkiwpkiykeyeqyslnillrflkcfpqaqasfpkfstkksnleqdpevkhqavvifnkvneiinsmdnqeeiikslkdlsqkhktvfkvdsiwfkelssifvstidggaefeklfsiicillrsay | 146 | a | a.1 | a.1.1 | a.1.1.2 | d1it2a_ a.1.1.2 (A:) Hagfish hemoglobin {Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]} |
d1or4a_ | etayfsdsngqqknriqltnkhadvkkqlkmvrlgdaelyvleqlqpliqenivnivdafyknldhesslmdiindhssvdrlkqtlkrhiqemfagviddefiekrnriasihlrigllpkwymgafqelllsmidiyeasitnqqellkaikattkilnleqqlvle | 169 | a | a.1 | a.1.1 | a.1.1.2 | d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor domain {Bacillus subtilis [TaxId: 1423]} |
d1itha_ | gltaaqikaiqdhwflnikgclqaaadsiffkyltaypgdlaffhkfssvplyglrsnpaykaqtltvinyldkvvdalggnagalmkakvpshdamgitpkhfgqllklvggvfqeefsadpttvaawgdaagvlvaamk | 141 | a | a.1 | a.1.1 | a.1.1.2 | d1itha_ a.1.1.2 (A:) Hemoglobin {Innkeeper worm (Urechis caupo) [TaxId: 6431]} |
d3g46a_ | psvydaaaqltadvkkdlrdswkvigsdkkgngvalmttlfadnqetigyfkrlgdvsqgmandklrghsitlmyalqnfidqldnpddlvcvvekfavnhitrkisaaefgkingpikkvlasknfgdkyanawaklvavvqaal | 146 | a | a.1 | a.1.1 | a.1.1.2 | d3g46a_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]} |
d1b0ba_ | slsaaqkdnvksswakasaawgtagpeffmalfdahddvfakfsglfsgaakgtvkntpemaaqaqsfkglvsnwvdnldnagalegqcktfaanhkargisagqleaafkvlagfmksyggdegawtavagalmgmirpdm | 142 | a | a.1 | a.1.1 | a.1.1.2 | d1b0ba_ a.1.1.2 (A:) Hemoglobin I {Clam (Lucina pectinata) [TaxId: 244486]} |
d3d1ka_ | slsdkdkaavralwskigkssdaigndalsrmivvypqtkiyfshwpdvtpgspnikahgkkvmggialavskiddlktglmelseqhayklrvdpsnfkilnhcilvvistmfpkeftpeahvsldkflsgvalalaeryr | 142 | a | a.1 | a.1.1 | a.1.1.2 | d3d1ka_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]} |
d1cg5a_ | vlssqnkkaieelgnlikanaeawgadalarlfelhpqtktyfskfsgfeacneqvkkhgkrvmnaladathhldnlhlhledlarkhgenllvdphnfhlfadcivvtlavnlqaftpvthcavdkflelvayelsscyr | 141 | a | a.1 | a.1.1 | a.1.1.2 | d1cg5a_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]} |
d3d1kb_ | vewtdkersiisdifshmdyddigpkalsrclvvypwtqryfsgfgnlynaegimsnanvaahgikvlhgldrgmknmdniadaytdlstlhseklhvdpdnfkllsdcitivlaakmghaftaetqgafqkflaavvsalgkqyh | 146 | a | a.1 | a.1.1 | a.1.1.2 | d3d1kb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]} |
d1cg5b_ | vklsedqehyikgvwkdvdhkqitakalervfvvypwttrlfsklqglfsandigvqqhadkvqralgeaiddlkkveinfqnlsgkhqeigvdtqnfkllgqtfmvelalhykktfrpkehaaaykffrlvaealssnyh | 141 | a | a.1 | a.1.1 | a.1.1.2 | d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]} |
d1gcvb_ | vhwtqeerdeisktfqgtdmktvvtqaldrmfkvypwtnryfqkrtdfrssihagivvgalqdavkhmddvktlfkdlskkhaddlhvdpgsfhlltdciivelaylrkdcftphiqgiwdkffevvidaiskqyh | 136 | a | a.1 | a.1.1 | a.1.1.2 | d1gcvb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Houndshark (Mustelus griseus) [TaxId: 89020]} |
d1hlba_ | ggtlaiqaqgdltlaqkkivrktwhqlmrnktsfvtdvfirifaydpsaqnkfpqmagmsasqlrssrqmqahairvssimseyveeldsdilpellatlarthdlnkvgadhynlfakvlmealqaelgsdfnektrdawakafsvvqavllvkhg | 157 | a | a.1 | a.1.1 | a.1.1.2 | d1hlba_ a.1.1.2 (A:) Hemoglobin, different isoforms {Caudina arenicola, also known as Molpadia arenicola [TaxId: 7698]} |
d1tu9a1 | naadrvmqsygrccastgffddfyrhflasspqirakfattdmtaqkhllragimnlvmyargmsdsklralgashsraaldirpelydlwldallmavaehdrdcdaetrdawrdvmgrgiaviksyy | 129 | a | a.1 | a.1.1 | a.1.1.2 | d1tu9a1 a.1.1.2 (A:2-130) Hypothetical protein PA3967 {Pseudomonas aeruginosa [TaxId: 287]} |
d1mbaa_ | slsaaeadlagkswapvfanknangldflvalfekfpdsanffadfkgksvadikaspklrdvssriftrlnefvnnaanagkmsamlsqfakehvgfgvgsaqfenvrsmfpgfvasvaappagadaawtklfgliidalkaaga | 146 | a | a.1 | a.1.1 | a.1.1.2 | d1mbaa_ a.1.1.2 (A:) Myoglobin {Slug sea hare (Aplysia limacina) [TaxId: 6502]} |
d1naza_ | mvlsegewqlvlhvwakveadvaghgqdiyirlfkshpetlekfdrfkhlkteaemkasedlkkqgvrvltalgailkkkghheaelkplaqshatkhkipikylefiseaiihvlhsrhpgnfgadaqgamnkalelfrkdiaakykelgyqg | 154 | a | a.1 | a.1.1 | a.1.1.2 | d1naza_ a.1.1.2 (A:) Myoglobin {Sperm whale (Physeter catodon) [TaxId: 9755]} |
d1q1fa_ | rpeselirqswrvvsrsplehgtvlfarlfalepsllplfqyngrqfsspedslsspefldhirkvmlvidaavtnvedlssleeyltslgrkhravgvrlssfstvgesllymlekslgpdftpatrtawsrlygavvqamsrgwdg | 148 | a | a.1 | a.1.1 | a.1.1.2 | d1q1fa_ a.1.1.2 (A:) Neuroglobin {Mouse (Mus musculus) [TaxId: 10090]} |
d1h97a_ | tltkheqdillkelgphvdtpahivetglgayhalftahpqyishfsrleghtienvmqsegikhyartlteaivhmlkeisndaevkkiaaqygkdhtsrkvtkdefmsgepiftkyfqnlvkdaegkaavekflkhvfpmmaaei | 147 | a | a.1 | a.1.1 | a.1.1.2 | d1h97a_ a.1.1.2 (A:) Trematode hemoglobin/myoglobin {Paramphistomum epiclitum [TaxId: 54403]} |
d3qm9a_ | adfdavlkcwgpveadyttigglvltrlfkehpetqklfpkfagiaqadiagnaavsahgatvlkklgellkakgshaailkplanshatkhkipinnfklisevlvkvmqekagldaggqtalrnvmgiiiadleanykelgfs | 145 | a | a.1 | a.1.1 | a.1.1.2 | d3qm9a_ a.1.1.2 (A:) automated matches {Thunnus atlanticus [TaxId: 48168]} |
d3qqqa_ | vfteeqealvvkswavmkknsaelglkfflkifeiapsaknlfsylkdspipleqnpklkphamtvfvmtcesavqlrkagkvtvresnlkrlgaihfkngvvnehfevtrfalletikeavpemwspemknawgeaydqlvaaiksemkp | 151 | a | a.1 | a.1.1 | a.1.1.2 | d3qqqa_ a.1.1.2 (A:) automated matches {Trema tomentosa [TaxId: 3480]} |
d3l0fa_ | mktpiteaiaaadtqgrflsntelqavdgrfkravasmeaaraltnnaqslidgaaqavyqkfpytttmqgsqyastpegkakcardigyylrmvtyclvaggtgpmdeyliaglseinstfdlspswyiealkyikanhgltgqaaveanayidyainals | 162 | a | a.1 | a.1.1 | a.1.1.3 | d3l0fa_ a.1.1.3 (A:) Phycocyanin alpha subunit {Thermosynechococcus elongatus [TaxId: 197221]} |
d1b8da_ | mksvitttisaadaagrfpsssdlesiqgniqraaarleaaqklsgnheavvkeagdacfakysylknageagdspekinkcyrdidhymrlinyslvvggtgpvdewgiagsrevyralnlpgsayiaaftftrdrlcvprdmssqagveftsaldyvinslc | 164 | a | a.1 | a.1.1 | a.1.1.3 | d1b8da_ a.1.1.3 (A:) Phycoerythrin alpha subunit {Red alga (Griffithsia monilis) [TaxId: 42003]} |
d1xg0c_ | dafsrvvtnadskaayvggadlqalkkfisegnkrldsvnsivsnascivsdavsgmicenpslispsgncytnrrmaaclrdgeiilryvsyallsgdasvledrclnglketysslgvpansnaravsimkacavafvnntasqkklstpqgdcsglasevggyfdkvtaais | 175 | a | a.1 | a.1.1 | a.1.1.3 | d1xg0c_ a.1.1.3 (C:) Phycoerythrin beta subunit {Cryptophyte (Rhodomonas sp. CS24) [TaxId: 79257]} |
d4po5b_ | mqdaitavinsadvqgkyldgaamdklksyfasgelrvraasvisanaativkeavaksllysdvtrpggnmyttrryaacirdldyylryatyamlagdasildervlnglketynslgvpisstvqaiqaikevtaslvgadagkemgvyldyicsgls | 161 | a | a.1 | a.1.1 | a.1.1.3 | d4po5b_ a.1.1.3 (B:) automated matches {Synechocystis sp. [TaxId: 1111708]} |
d1kr7a_ | mvnwaavvddfyqelfkahpeyqnkfgfkgvalgslkgnaayktqagktvdyinaaiggsadaaglasrhkgrnvgsaefhnakaclakacsahgapdlghaiddilshl | 110 | a | a.1 | a.1.1 | a.1.1.4 | d1kr7a_ a.1.1.4 (A:) Nerve tissue mini-hemoglobin (neural globin) {Milky ribbon worm (Cerebratulus lacteus) [TaxId: 6221]} |
d2wy4a_ | tkeqiqiikdcvpilqkngedltnefykimfndypevkpmfnmekqisgeqpkalamailmaaknienlenmrsfvdkvaithvnlgvkeehypivgacllkaiknllnpdeatlkawevaygkiakfyidiekklydk | 139 | a | a.1 | a.1.1 | a.1.1.0 | d2wy4a_ a.1.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]} |
d2ig3a_ | mkfetinqesiaklmeifyekvrkdkdlgpifnnaigtsdeewkehkakignfwagmllgegdyngqplkkhldlppfpqeffeiwlklfeeslnivyneemknvilqraqmiashfqnmlykyggh | 127 | a | a.1 | a.1.1 | a.1.1.0 | d2ig3a_ a.1.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]} |
d3pt8a_ | ttltnpqkaairsswskfmdngvsngqgfymdlfkahpetltpfkslfggltlaqlqdnpkmkaqslvfcngmssfvdhlddndmlvvliqkmaklhnnrgirasdlrtaydilihymedhnhmvggakdawevfvgficktlgdymkels | 151 | a | a.1 | a.1.1 | a.1.1.0 | d3pt8a_ a.1.1.0 (A:) automated matches {Clam (Lucina pectinata) [TaxId: 244486]} |
d2bk9a_ | mnsdevqlikktweipvatptdsgaailtqffnrfpsnlekfpfrdvpleelsgnarfrahagriirvfdesiqvlgqdgdlekldeiwtkiavshiprtvskesynqlkgvildvltaassldesqaatwaklvdhvyaiifkaidddgnak | 153 | a | a.1 | a.1.1 | a.1.1.0 | d2bk9a_ a.1.1.0 (A:) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} |
d2c0ka_ | mnseevndikrtwevvaakmteagvemlkryfkkyphnlnhfpwfkeipfddlpenarfkthgtrilrqvdegvkalsvdfgdkkfddvwkklaqthhekkverrsynelkdiiievvcscvklnekqvhayhkffdraydiafaemakm | 150 | a | a.1 | a.1.1 | a.1.1.0 | d2c0ka_ a.1.1.0 (A:) automated matches {Gasterophilus intestinalis [TaxId: 84525]} |
d6td7a_ | gpllqrvggldvvkkvvelfyrklyadpqlikylhdqdpmhlrakqsmfvswlfgppnvpytgksvriahlriikqrgfspedfdlgmkyfeeamtelgapevlrgevmrrmlpykdaiftpaagd | 126 | a | a.1 | a.1.1 | a.1.1.0 | d6td7a_ a.1.1.0 (A:) automated matches {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]} |
d6bmea_ | stlhaklggaaavaatvdvfykklmndpdlepffrgvdmvtliakqnrflayafgatthyhgkdivmghahliinrglnlthfdkvaghfvdslkemgvgqelideaagvligvrplfdperykgkv | 127 | a | a.1 | a.1.1 | a.1.1.0 | d6bmea_ a.1.1.0 (A:) automated matches {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]} |
d3wctd_ | fcseadativikqwnqiynagigaksrwtmgneifsslfklkpesevlfnnvnvanmssgafhahtvrvlsgldmginylndagtltsltahlaaqhvartglkavyfdamgkvlmtvlpslidnfnpdawrncllplknaiakglp | 147 | a | a.1 | a.1.1 | a.1.1.0 | d3wctd_ a.1.1.0 (D:) automated matches {Lamellibrachia satsuma [TaxId: 104711]} |
d3ubca_ | idqkekelikeswkriepnkneigllfyanlfkeeptvsvlfqnpissqsrklmqvlgilvqgidnlegliptlqdlgrrhkqygvvdshyplvgdcllksiqeylgqgfteeakaawtkvygiaaqvmta | 131 | a | a.1 | a.1.1 | a.1.1.0 | d3ubca_ a.1.1.0 (A:) automated matches {Methylacidiphilum infernorum [TaxId: 481448]} |
d3wfwa1 | mtreeikmiqkswlrvidkmdeagllfyrrlfdvepkvrplfkidiekqgrklmdvlnwivlnlqdidaaldaarelarrhvkygvkaehypvvghtliwtlrkmigsewtkqleqlwtqayealaqvmieeh | 133 | a | a.1 | a.1.1 | a.1.1.0 | d3wfwa1 a.1.1.0 (A:1-133) automated matches {Methylacidiphilum infernorum [TaxId: 481448]} |
d2wtga_ | smnrqeisdlcvkslegrmvgteaqniengnafyryfftnfpdlrvyfkgaekytaddvkkserfdkqgqrillachllanvytneevfkgyvretinrhriykmdpalwmafftvftgylesvgslndqqkaawmalgkefnaesqthlknsnlphv | 158 | a | a.1 | a.1.1 | a.1.1.0 | d2wtga_ a.1.1.0 (A:) automated matches {Nematode (Caenorhabditis elegans) [TaxId: 6239]} |
d4xxia_ | lavatitqaeqqdrflgrgeldelasyfasgakrleiaqlltenseiivsraanrifqkienmakslrdlswflryatyaivagdpniivvntrglreiienacsgeativalqeikaaslsyfrkdpeaaeivsqymdvlitefka | 147 | a | a.1 | a.1.1 | a.1.1.0 | d4xxia_ a.1.1.0 (A:) automated matches {Nostoc sp. [TaxId: 103690]} |
d2zs0a_ | vcnrleqilvktqwaqsygeaenraafsrdlfselfniqgssralfsgvgvddmnsaaftahclrvtgalnrlisqldqqatinadlahlagqhasrnldasnfaamgqavmsvvpthldcfnqhawgecyeriasgisg | 140 | a | a.1 | a.1.1 | a.1.1.0 | d2zs0a_ a.1.1.0 (A:) automated matches {Oligobrachia mashikoi [TaxId: 55676]} |
d2zs0b_ | dctslnrllvkrqwaeaygegtnrellgnriwedlfanmpdarglfsrvngndidssefqahslrvlggldmcvaslddvpvlnallarlnsqhdsrgipaagypafvasaisavratvgarsfdndawnscmnqivsgisg | 142 | a | a.1 | a.1.1 | a.1.1.0 | d2zs0b_ a.1.1.0 (B:) automated matches {Oligobrachia mashikoi [TaxId: 55676]} |
d2zs0c_ | ssccssedranvmhnwdaawsaaysdrrvalaqavfaslfsrdaaaqglfsgvsadnpdsadfrahcvrvvngldvainmlndpavlneqlahlsaqhqaragvaaahfdvmaeafaevmpqvsscfssdswnrcfariangisagl | 147 | a | a.1 | a.1.1 | a.1.1.0 | d2zs0c_ a.1.1.0 (C:) automated matches {Oligobrachia mashikoi [TaxId: 55676]} |
d2zs0d_ | eccsrgdaevvisewdqvfnaamagssesaigvaifdvfftssgvspsmfpgggdsssaeflaqvsrvisgadiainsltnratcdsllshlnaqhkaisgvtgaavthlseaissvvaqvlpsahidawgycmayiaagigagl | 145 | a | a.1 | a.1.1 | a.1.1.0 | d2zs0d_ a.1.1.0 (D:) automated matches {Oligobrachia mashikoi [TaxId: 55676]} |
d3ozua1 | mltqktkdivkatapvlaehgydiikcfyqrmfeahpelknvfnmahqeqgqqqqalaravyayaeniedpnslmavlkniankhaslgvkpeqypivgehllaaikevlgnaatddiisawaqaygnladvlmgmeselyersaeqpgg | 150 | a | a.1 | a.1.1 | a.1.1.0 | d3ozua1 a.1.1.0 (A:1-150) automated matches {Ralstonia eutropha [TaxId: 381666]} |
d5ziqa1 | dprfpltardkfslvkswktfsrnlesagkemllklfiehpdmkdlfpkfkaktpdqlrndesfeeaalahitpydqavqdsdnvdilltnlkrvgrqhktvpgfqesyfermekclvfalqttladaytenmeriykiwiswttekiregfre | 154 | a | a.1 | a.1.1 | a.1.1.0 | d5ziqa1 a.1.1.0 (A:37-190) automated matches {Ramazzottius varieornatus [TaxId: 947166]} |
d6wk3a_ | maptlseqtrqlvrasvpalqkhsvaisatmyrllferypetrslfelpervihklasallayarsidnpsalqaairrmvlsharagvqavhyplvweclrdaikevlgpdatetllqawkeaydflahllstkeaqvyavlae | 145 | a | a.1 | a.1.1 | a.1.1.0 | d6wk3a_ a.1.1.0 (A:) automated matches {Rhodothermus marinus [TaxId: 518766]} |
d4po5a1 | svvsqvilqaddqlryptsgelkgiqaflttgaqririaetlaenekkivdqaqkqlfkkhpeyrapggnaygqrqynqclrdygwylrlvtygvlagnkepiettgligvkemynslnvpvpgmvdavtvlkdaalgllsaedanetapyfdyiiqfms | 160 | a | a.1 | a.1.1 | a.1.1.0 | d4po5a1 a.1.1.0 (A:2-161) automated matches {Synechocystis sp. [TaxId: 1111708]} |
d1x46a_ | dptwvdmeagdialvksswaqihdkevdilynffksypasqakfsafagkdleslkdtapfalhatrivsvineaialmgvaenrpalknvlkqqginhkgrgvtaahfeefetaleafleshasgynagtkkawdsafnnmysvvfpel | 150 | a | a.1 | a.1.1 | a.1.1.0 | d1x46a_ a.1.1.0 (A:) automated matches {Tokunagayusurika akamusi [TaxId: 28383]} |
d1x3ka_ | afvglsdseeklvrdawapihgdlqgtantvfynylkkypsnqdkfetlkghpldevkdtanfkliagriftifdncvknvgndkgfqkviadmsgphvarpithgsyndlrgviydsmhldsthgaawnkmmdnffyvfyecldgrcsqfs | 152 | a | a.1 | a.1.1 | a.1.1.0 | d1x3ka_ a.1.1.0 (A:) automated matches {Tokunagayusurika akamusi [TaxId: 28383]} |
d1kf6b1 | mthfiesleaikpyiignsrtadqgtniqtpaqmakyhqfsgcincglcyaacpqfglnpefigpaaitlahrynedsrdhgkkermaqlnsqngvwsctfvgycsevcpkhvdpaaaiqqgkvesskdfliatlkpr | 138 | a | a.1 | a.1.2 | a.1.2.1 | d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]} |
d2h88b2 | lsnfyaqyksiepylkkkdeskqgkeqylqsiedrqkldglyecilcaccstscpsywwngdkylgpavlmqayrwmidsrddyteerlaqlqdpfslyrchtimnctrtcpkglnpgkaiaeikkmmatyk | 132 | a | a.1 | a.1.2 | a.1.2.1 | d2h88b2 a.1.2.1 (B:115-246) Succinate dehydogenase {Chicken (Gallus gallus) [TaxId: 9031]} |
d2bs2b1 | tgnwfngmsqrveswihaqkehdiskleeriepevaqevfeldrciecgcciaacgtkimredfvgaaglnrvvrfmidphdertdedyyeligdddgvfgcmtllachdvcpknlplqskiaylrrkmvsvnm | 134 | a | a.1 | a.1.2 | a.1.2.1 | d2bs2b1 a.1.2.1 (B:107-240) automated matches {Wolinella succinogenes [TaxId: 844]} |
d7m32a1 | pvlskdvadiesilalnprtqshaalhstlakkldkkhwkrnpdkncfhceklennfddikhttlgergalreamrclkcadapcqkscpthldiksfitsisnknyygaakmifsdnplgltcgmvcptsdlcvggcnlyateegsinigglqqfasevfkamnipqirnpclpsqekmp | 181 | a | a.1 | a.1.2 | a.1.2.2 | d7m32a1 a.1.2.2 (A:3-183) Dihydropyrimidine dehydrogenase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} |
d6lumb2 | mepffdayravkpflvtsgnpptkeriqsptdraryddttkcilcaccttscpvywsegsyfgpaaivnahrfifdsrdeaaaerldilnevdgvwrcrttfncteacprgiqvtqaiqevkralmfa | 128 | a | a.1 | a.1.2 | a.1.2.0 | d6lumb2 a.1.2.0 (B:133-260) automated matches {Mycolicibacterium smegmatis [TaxId: 1445611]} |
d1grja1 | qaipmtlrgaeklreeldflksvrrpeiiaaiaearehgdlkenaeyhaareqqgfcegrikdieaklsnaqvidvtk | 78 | a | a.2 | a.2.1 | a.2.1.1 | d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]} |
d2f23a1 | revkltkagyerlmqqlerererlqeatkilqelmessddyddsgleaakqekariearidsledilsravilee | 75 | a | a.2 | a.2.1 | a.2.1.1 | d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]} |
d2p4va1 | mktplvtregyeklkqelnylwreerpevtkkvtwaaslgdrsenadyqynkkrlreidrrvryltkcmenlkivdysp | 79 | a | a.2 | a.2.1 | a.2.1.0 | d2p4va1 a.2.1.0 (A:1-79) automated matches {Escherichia coli [TaxId: 562]} |
d2qamx1 | mkakelreksveelntellnllreqfnlrmqaasgqlqqshllkqvrrdvarvktllnekaga | 63 | a | a.2 | a.2.2 | a.2.2.1 | d2qamx1 a.2.2.1 (X:1-63) Ribosomal protein L29 (L29p) {Escherichia coli [TaxId: 562]} |
d1vq8v1 | tvlhvqeirdmtpaereaelddlktellnaravqaaggapenpgrikelrkaiariktiqgeegd | 65 | a | a.2 | a.2.2 | a.2.2.1 | d1vq8v1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Haloarcula marismortui [TaxId: 2238]} |
d2j0121 | earklspveleklvrekkrelmelrfqasigqlsqnhkirdlkrqiarllt | 51 | a | a.2 | a.2.2 | a.2.2.1 | d2j0121 a.2.2.1 (2:12-62) Ribosomal protein L29 (L29p) {Thermus thermophilus [TaxId: 274]} |
d2qwob_ | dpeklkilewiegkernirallstmhtvlwagetkwkpvgmadlvtpeqvkkvyrkavlvvhpckatgqpyeqyakmifmelndawsefenq | 92 | a | a.2 | a.2.3 | a.2.3.1 | d2qwob_ a.2.3.1 (B:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} |
d1wjza1 | maleqtlkkdwysilgadpsanmsdlkqkyqklillyhpdkqsadvpagtmeecmqkfieidqawkilgneetkkkydlqr | 81 | a | a.2 | a.2.3 | a.2.3.1 | d1wjza1 a.2.3.1 (A:8-88) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} |
d1fpoa1 | mdyftlfglparyqldtqalslrfqdlqrqyhpdkfasgsqaeqlaavqqsatinqawqtlrhplmraeyllslhg | 76 | a | a.2 | a.2.3 | a.2.3.1 | d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} |
d1iura1 | ilkevtsvveqawklpeserkkiirrlylkwhpdknpenhdianevfkhlqneinrlekqafldqnadrasrrtf | 75 | a | a.2 | a.2.3 | a.2.3.1 | d1iura1 a.2.3.1 (A:14-88) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} |
d1fafa_ | mdrvlsradkerllellklprqlwgdfgrmqqaykqqslllhpdkggshalmqelnslwgtfktevynlrmnlggtgfq | 79 | a | a.2 | a.2.3 | a.2.3.1 | d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} |
d1gh6a1 | reeslqlmdllglersawgniplmrkaylkkckefhpdkggdeekmkkmntlykkmedgvkyahqpdfggfwdateiptygtdeweqwwnafneenlfcseempssddeat | 111 | a | a.2 | a.2.3 | a.2.3.1 | d1gh6a1 a.2.3.1 (A:7-117) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} |
d2o37a_ | mvketklydllgvspsaneqelkkgyrkaalkyhpdkptgdtekfkeiseafeilndpqkreiydqygleaarsggpsfgp | 81 | a | a.2 | a.2.3 | a.2.3.0 | d2o37a_ a.2.3.0 (A:) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} |
d2yuaa1 | sqgdcsysrtalydllgvpstatqaqikaayyrqcflyhpdrnsgsaeaaerftrisqayvvlgsatlrrkydrgllsdedlrgpg | 86 | a | a.2 | a.2.3 | a.2.3.0 | d2yuaa1 a.2.3.0 (A:8-93) automated matches {Human (Homo sapiens) [TaxId: 9606]} |
d6rzya1 | mdyytllgvdkgcseddlrraylklamkwhpdkhvnkgskveaeekfkniceaysvlsdnekrvkydl | 68 | a | a.2 | a.2.3 | a.2.3.0 | d6rzya1 a.2.3.0 (A:3-70) automated matches {Plasmodium falciparum [TaxId: 36329]} |
d3ag7a1 | eeiknidakirkwssgksgnirsllstlqyilwsgsgwkpvplmdmiegnavrksyqrallilhpdklqqkgasanqkymaekvfellqeawdhfntlgp | 100 | a | a.2 | a.2.3 | a.2.3.0 | d3ag7a1 a.2.3.0 (A:551-650) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} |
d1fxkc_ | aalaeivaqlniyqsqveliqqqmeavratiseleilektlsdiqgkdgsetlvpvgagsfikaelkdtsevimsvgagvaikknfedamesiksqknelestlqkmgenlraitdimmklspqaeellaava | 133 | a | a.2 | a.2.5 | a.2.5.1 | d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Methanobacterium thermoautotrophicum [TaxId: 145262]} |
d1fxka_ | qnvqhqlaqfqqlqqqaqaisvqkqtvemqinetqkaleelsraaddaevykssgnilirvakdelteelqekletlqlrektierqeervmkklqemqvniqeamk | 107 | a | a.2 | a.2.5 | a.2.5.1 | d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Methanobacterium thermoautotrophicum [TaxId: 145262]} |
d1cxzb_ | wslleqlglagadlaapgvqqqlelererlrreirkelklkegaenlrrattdlgrslgpvelllrgssrrldllhqqlqelhahv | 86 | a | a.2 | a.2.6 | a.2.6.1 | d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]} |
d4nkgb_ | lsrvaglekqlaielkvkqgaenmiqtysngstkdrkllltaqqmlqdsktkidiirmqlrralqa | 66 | a | a.2 | a.2.6 | a.2.6.1 | d4nkgb_ a.2.6.1 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]} |
d1seta1 | mvdlkrlrqepevfhrairekgvaldleallaldrevqelkkrlqevqternqvakrvpkappeekealiargkalgeeakrleealrekearlealllqvplppwpgap | 110 | a | a.2 | a.2.7 | a.2.7.1 | d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} |
d2iy5a1 | leelkalkarylgkkglltqemkglsalpleerrkrgqelnaikaaleaalearekaleeaalkealere | 70 | a | a.2 | a.2.7 | a.2.7.2 | d2iy5a1 a.2.7.2 (A:15-84) Phenylalanyl-tRNA synthetase (PheRS) {Thermus thermophilus [TaxId: 274]} |
d1ivsa1 | dveewrrrqekrlkellalaersqrklaspgfrekapkevveaeearlkenleqaerirealsqig | 66 | a | a.2 | a.2.7 | a.2.7.3 | d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]} |
d1lrza1 | fdeyikelneerdilnkdlnkalkdiekrpenkkahnkrdnlqqqldaneqkieegkrlqeehgn | 65 | a | a.2 | a.2.7 | a.2.7.4 | d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]} |
d6p24c1 | aelvasakaaisqasdvaaldnvrveylgkkghltlqmttlrelppeerpaagavineakeqvqqalnarkaelesaalnarlaae | 86 | a | a.2 | a.2.7 | a.2.7.0 | d6p24c1 a.2.7.0 (C:5-90) automated matches {Escherichia coli [TaxId: 83333]} |
d1k4ta1 | eksmmnlqtkidakkeqladarrdlksakadakvmkdaktkkvveskkkavqrleeqlmklevqatdreenk | 72 | a | a.2 | a.2.8 | a.2.8.1 | d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]} |
d1qoja_ | spkalqqkiheleglmmqhaqnlefeeaaqirdqlhqlrelfiaas | 46 | a | a.2 | a.2.9 | a.2.9.1 | d1qoja_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]} |
d2hldh2 | plesfsqeniknllaeakknvsssdareaaeaaiqvevlenlqsv | 45 | a | a.2 | a.2.10 | a.2.10.1 | d2hldh2 a.2.10.1 (H:92-136) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} |
d2jdih1 | dmldlgaakanlekaqsellgaadeatraeiqirieanealvkal | 45 | a | a.2 | a.2.10 | a.2.10.1 | d2jdih1 a.2.10.1 (H:101-145) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} |
d1aqta1 | qdldearameakrkaeehissshgdvdyaqasaelakaiaqlrvieltkk | 50 | a | a.2 | a.2.10 | a.2.10.1 | d1aqta1 a.2.10.1 (A:87-136) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Escherichia coli [TaxId: 562]} |
d1coja1 | vhklepkdhlkpqnlegisneqiephfeahykgyvakyneiqekladqnfadrskanqnyseyrelkveetfnymgvvlhelyfgmltp | 89 | a | a.2 | a.2.11 | a.2.11.1 | d1coja1 a.2.11.1 (A:2-90) Fe superoxide dismutase (FeSOD) {Aquifex pyrophilus [TaxId: 2714]} |
d1my6a1 | afvqeplpfdpgalepygmsaktlefhygkhhkgyvdnlnkltqdteladksledvirttygdaakvgifnnaaqvwnhtffwnslkp | 88 | a | a.2 | a.2.11 | a.2.11.1 | d1my6a1 a.2.11.1 (A:1-88) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]} |
d1ix9a1 | sytlpslpyaydalephfdkqtmeihhtkhhqtyvnnanaaleslpefanlpveelitkldqlpadkktvlrnnagghanhslfwkglkk | 90 | a | a.2 | a.2.11 | a.2.11.1 | d1ix9a1 a.2.11.1 (A:1-90) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]} |
d3ak2a1 | mvsfkryelpplpynynalepyiieeimklhhqkhhntyvkganaalekiekhlkgeiqidvravmrdfsfnyaghimhtifwpnmappgkg | 92 | a | a.2 | a.2.11 | a.2.11.0 | d3ak2a1 a.2.11.0 (A:1-92) automated matches {Aeropyrum pernix [TaxId: 272557]} |
d4f6ea1 | vtlpdlkwdfgalepyisgqinelhytkhhqtyvngfntavdqfqelsdllakepspanarkmiaiqqnikfhgggftnhclfwenlap | 89 | a | a.2 | a.2.11 | a.2.11.0 | d4f6ea1 a.2.11.0 (A:2-90) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]} |
d3ceia1 | mftlrelpfakdsmgdflspvafdfhhgkhhqtyvnnlnnlikgtdfeksslfailtkssggvfnnaaqiynhdfywdclspka | 84 | a | a.2 | a.2.11 | a.2.11.0 | d3ceia1 a.2.11.0 (A:1-84) automated matches {Helicobacter pylori [TaxId: 210]} |
d4f2na1 | cyhtlphlrypaelptlgfnykdgiqpvmsprqlelhyskhhsayvdklntlgkgyegktieeiilattgineskvmfnqaaqhfnhsffwkclsp | 96 | a | a.2 | a.2.11 | a.2.11.0 | d4f2na1 a.2.11.0 (A:22-117) automated matches {Leishmania major [TaxId: 5664]} |
d2cw3a1 | pssglrmtlpyglealepvisaatvdfhynkhhqgyiqklldatglpesrinlkslvtlgpdragenvfnaagqiynhnmywlsmvp | 87 | a | a.2 | a.2.11 | a.2.11.0 | d2cw3a1 a.2.11.0 (A:4-90) automated matches {Perkinsus marinus [TaxId: 31276]} |
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Protein sequences from SCOPe-2.08
This dataset is based on section A.4.3 of [1]. For understanding the identification of remote homology relations in hidden layers, we consider the Astral SCOPe v2.08 dataset [2], containing genetic domain sequence subsets filtered to obtain < 40% pairwise sequence identity. Each domain is hierarchically classified into fold, super-family, and family. We impose an initial filter by excluding the Rossman-like folds (c.2–c.5, c.27 and 28, c.30 and 31) and the four- to eight-bladed b-propellers (b.66–b.70), as recommended in [3]. As a result, we obtained a dataset composed of 14535 sequences. For each specific task, we define an ad hoc dataset, which we will describe in detail in the corresponding sections A.5.2 and A.6.4, essentially to ensure sufficient population in the classes
References
- Lucrezia Valeriani, Francesca Cuturello, Alessio Ansuini, Alberto Cazzaniga. The geometry of hidden representations of protein language models. bioRxiv 2022.10.24.513504; doi: https://doi.org/10.1101/2022.10.24.513504
- John-Marc Chandonia, Lindsey Guan, Shiangyi Lin, Changhua Yu, Naomi K Fox, and Steven E Brenner. SCOPe: improvements to the structural classification of proteins – extended database to facilitate variant interpretation and machine learning. Nucleic Acids Research, 50(D1):D553–D559, 12 2021
- Johannes Söding and Michael Remmert. Protein sequence comparison and fold recognition: progress and good-practice benchmarking. Current opinion in structural biology, 21 3:404–411, 2011.
Structure
full_data.csvcontains the details of 14535 proteins as decribed above .dataset_script.pycontains the code to load and process the dataset.
Usage
from datasets import load_dataset
dataset = load_dataset("vkarthik095/filtered-SCOPe-2.08")
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