Datasets:

songlab
/

TraitGym

Dataset card Viewer Files Files and versions Community

Subset (4)

complex_traits · 11.4k rows

Split (1)

test · 11.4k rows

chrom stringclasses 22 values	pos int64 99.5k 249M	ref stringclasses 4 values	alt stringclasses 4 values	pip float64 0 1	trait stringclasses 259 values	label bool 2 classes	maf float64 0 0.5	ld_score float64 1.53 628	consequence stringclasses 16 values	tss_dist int64 0 1.58M	match_group stringlengths 5 37
22	41,245,004	C	A	0		false	0.001939	16.231	3_prime_UTR_variant	4,072	3_prime_UTR_variant_39
22	41,408,712	G	A	0.959031	BMI,BW	true	0.29068	349.91	dELS	25,776	dELS_205
22	41,468,696	G	C	0		false	0.007762	70.461	PLS	3	PLS_20
22	41,666,763	G	A	0		false	0.30103	358.9	dELS	15,858	dELS_205
22	41,844,793	C	T	0		false	0.29075	348.61	dELS	11,687	dELS_205
22	41,926,850	G	T	0.999997	TP	true	0.024806	67.348	PLS	43	PLS_20
22	41,926,853	G	A	0.000722		false	0.010064	63.698	PLS	46	PLS_20
22	42,083,320	G	T	0		false	0.002794	19.219	3_prime_UTR_variant	3,619	3_prime_UTR_variant_39
22	42,370,097	C	A	0		false	0.004877	12.962	pELS_flank	26,480	pELS_flank_23
22	42,434,570	C	T	0		false	0.1858	82.907	dELS	2,166	dELS_204
22	42,494,618	A	C	0		false	0.1304	175.39	dELS_flank	25,177	dELS_flank_108
22	43,077,428	T	C	0		false	0.37006	89.768	pELS	1,841	pELS_66
22	43,104,206	G	T	0.937113	PrC	true	0.49836	96.345	dELS	6,543	dELS_206
22	43,110,672	G	A	0.000765		false	0.029018	56.584	PLS	77	PLS_20
22	43,121,980	C	G	0.000514		false	0.1633	46.075	dELS_flank	11,229	dELS_flank_107
22	43,155,402	G	A	0		false	0.16085	36.619	dELS	3,466	dELS_208
22	43,179,123	C	T	0		false	0.055778	26.002	dELS	7,372	dELS_202
22	43,237,971	C	A	0		false	0.28559	55.913	3_prime_UTR_variant	24,827	3_prime_UTR_variant_40
22	43,253,709	C	T	0		false	0.024276	17.221	dELS_flank	9,089	dELS_flank_104
22	43,289,308	C	T	0		false	0.10298	40.778	dELS	26,508	dELS_201
22	43,290,148	C	A	0		false	0.11859	40.113	dELS	27,348	dELS_201
22	43,752,393	C	T	0		false	0.001541	11.832	intron_variant	59,796	intron_variant_122
22	44,020,985	T	C	0		false	0.00149	4.2842	dELS_flank	3,316	dELS_flank_105
22	44,022,159	G	A	0		false	0.029515	7.2556	pELS_flank	2,142	pELS_flank_26
22	44,026,453	T	C	0		false	0.30221	34.007	PLS	148	PLS_19
22	44,051,068	C	T	0		false	0.44576	30.79	dELS	17,992	dELS_203
22	44,059,593	A	G	0		false	0.44422	26.79	dELS	9,467	dELS_203
22	44,084,517	T	C	0		false	0.45807	27.883	dELS	15,455	dELS_203
22	44,086,511	C	T	0		false	0.10401	35.946	dELS	17,449	dELS_201
22	44,090,406	A	G	0		false	0.098015	41.7	dELS	21,344	dELS_201
22	44,686,589	C	G	0		false	0.023181	17.94	dELS_flank	9,503	dELS_flank_104
22	44,693,778	T	C	0		false	0.026221	21.391	dELS_flank	8,425	dELS_flank_104
22	44,707,312	G	A	0		false	0.005604	8.1042	dELS	4,836	dELS_200
22	44,728,966	C	T	0.000595		false	0.1612	34.486	dELS	3,704	dELS_208
22	44,729,877	G	A	0.000552		false	0.16119	34.569	dELS	4,615	dELS_208
22	44,730,253	G	A	0		false	0.007205	7.5795	dELS	4,991	dELS_200
22	44,735,582	T	A	0		false	0.1677	35.338	dELS	10,320	dELS_208
22	44,735,675	T	G	0		false	0.16736	35.377	dELS	10,413	dELS_208
22	44,753,419	C	T	0		false	0.033411	12.405	pELS_flank	713	pELS_flank_26
22	44,812,046	G	A	0		false	0.002994	9.8826	intron_variant	59,340	intron_variant_122
22	45,199,007	G	T	0.000937		false	0.026832	20.111	pELS_flank	6,841	pELS_flank_24
22	45,230,416	C	T	0.000794		false	0.002398	9.2072	dELS	3,512	dELS_207
22	45,247,338	G	A	0		false	0.49173	99.388	dELS	6,443	dELS_206
22	45,314,734	G	A	0		false	0.001367	4.4528	dELS_flank	3,685	dELS_flank_105
22	45,315,106	A	T	0		false	0.002848	10.18	dELS	3,313	dELS_207
22	45,413,743	C	A	0		false	0.40428	194.03	5_prime_UTR_variant	49	5_prime_UTR_variant_33
22	45,492,734	G	A	0		false	0.059322	27.089	dELS	9,503	dELS_202
22	45,497,870	T	G	0		false	0.005815	8.1779	dELS	4,367	dELS_200
22	45,502,712	G	C	0		false	0.32484	19.924	PLS	119	PLS_19
22	45,506,796	C	T	0		false	0.0082	8.3256	dELS	3,819	dELS_200
22	45,506,843	G	A	0		false	0.008221	8.3147	dELS	3,866	dELS_200
22	45,769,221	C	A	0.000702		false	0.14235	171.93	dELS_flank	24,374	dELS_flank_108
22	45,821,292	G	T	0		false	0.12428	176.52	dELS_flank	27,695	dELS_flank_108
22	45,955,602	G	A	0.002257		false	0.16832	41.706	dELS_flank	17,112	dELS_flank_107
22	45,969,257	G	A	0.999905	eBMD	true	0.002641	9.5349	dELS	3,457	dELS_207
22	45,979,731	C	T	0.98026	eBMD	true	0.16714	37.776	dELS	2,568	dELS_208
22	46,004,926	C	T	0		false	0.001603	11.944	pELS_flank	27,763	pELS_flank_23
22	46,121,413	G	A	0		false	0.1023	39.604	dELS	29,107	dELS_201
22	46,136,453	C	T	0		false	0.16869	44.114	dELS_flank	14,067	dELS_flank_107
22	46,219,479	G	A	0.945802	BW	true	0.12871	164.85	dELS_flank	28,805	dELS_flank_108
22	46,289,617	G	A	0		false	0.058287	26.371	dELS	7,252	dELS_202
22	46,529,197	C	A	0		false	0.37496	55.704	intron_variant	5,002	intron_variant_123
22	46,529,215	G	A	0		false	0.37496	55.715	intron_variant	4,984	intron_variant_123
22	46,529,305	C	A	0		false	0.37481	55.825	intron_variant	4,894	intron_variant_123
22	46,529,818	A	G	0		false	0.37361	55.853	intron_variant	4,381	intron_variant_123
22	46,530,157	T	A	0		false	0.37328	55.906	intron_variant	4,042	intron_variant_123
22	46,677,961	C	G	0		false	0.007565	15.956	3_prime_UTR_variant	3,352	3_prime_UTR_variant_39
22	46,740,211	G	A	0		false	0.06983	25.867	pELS_flank	1,958	pELS_flank_25
22	46,770,343	G	T	0		false	0.003861	9.3045	dELS	3,583	dELS_207
22	47,953,807	A	C	0		false	0.43135	48.056	intron_variant	535,745	intron_variant_124
22	47,957,913	A	G	0		false	0.4453	47.799	intron_variant	531,639	intron_variant_124
22	47,959,106	T	A	0		false	0.43041	48.209	intron_variant	530,446	intron_variant_124
22	47,990,921	C	T	0.997536	BMI	true	0.43761	53.514	intron_variant	498,631	intron_variant_124
22	48,000,195	A	T	0		false	0.45665	68.918	intron_variant	489,357	intron_variant_124
22	48,595,829	A	G	0		false	0.10958	34.269	dELS	19,522	dELS_201
22	48,633,512	G	C	0		false	0.002794	11.733	intron_variant	57,205	intron_variant_122
22	48,699,993	T	G	0		false	0.41815	122.91	dELS_flank	6,745	dELS_flank_106
22	48,700,139	A	C	0		false	0.41823	122.95	dELS_flank	6,891	dELS_flank_106
22	48,700,164	C	T	0		false	0.41897	123.14	dELS_flank	6,916	dELS_flank_106
22	48,700,167	A	G	0		false	0.41898	123.14	dELS_flank	6,919	dELS_flank_106
22	48,700,171	C	G	0		false	0.41898	123.14	dELS_flank	6,923	dELS_flank_106
22	48,700,212	C	T	0		false	0.42088	123.43	dELS_flank	6,964	dELS_flank_106
22	48,700,318	A	G	0		false	0.41823	123.02	dELS_flank	7,070	dELS_flank_106
22	48,700,502	G	C	0		false	0.41828	123.07	dELS_flank	7,254	dELS_flank_106
22	48,701,280	C	T	0		false	0.42022	123.88	dELS_flank	8,032	dELS_flank_106
22	48,705,151	G	C	0		false	0.49939	94.894	dELS	11,903	dELS_206
22	49,169,568	G	T	0		false	0.41435	52.951	intron_variant	476,320	intron_variant_124
22	49,171,619	A	C	0		false	0.42109	52.555	intron_variant	478,371	intron_variant_124
22	49,172,536	C	T	0		false	0.4206	52.604	intron_variant	479,288	intron_variant_124
22	49,172,564	A	G	0		false	0.4297	52.727	intron_variant	479,316	intron_variant_124
22	49,967,092	T	G	0.009725		false	0.18884	81.828	dELS	6,319	dELS_204
22	50,006,148	A	G	0.003396		false	0.48451	100.28	dELS	6,616	dELS_206
22	50,186,650	G	C	0.000616		false	0.36692	89.248	pELS	732	pELS_66
22	50,190,508	G	A	1	Plt	true	0.072852	57.97	PLS	89	PLS_21
22	50,343,347	G	C	0.003036		false	0.43617	198.69	5_prime_UTR_variant	15	5_prime_UTR_variant_33
22	50,368,376	T	C	0		false	0.19181	86.507	dELS	3,695	dELS_204
22	50,571,623	C	T	0		false	0.061159	23.9	dELS	6,291	dELS_202
22	50,671,289	G	A	0		false	0.036223	12.733	pELS_flank	3,125	pELS_flank_26
22	50,713,837	C	G	0		false	0.060562	20.896	dELS	8,340	dELS_202
22	50,783,672	G	T	0		false	0.05465	43.615	PLS	4	PLS_21