Datasets:

pie
/

chemprot

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PIE Dataset Card for "ChemProt"

This is a PyTorch-IE wrapper for the ChemProt Huggingface dataset loading script.

Data Schema

There are three versions of the dataset supported, chemprot_full_source, chemprot_shared_task_eval_source and chemprot_bigbio_kb.

`ChemprotDocument` for `chemprot_source` and `chemprot_shared_task_eval_source`

defines following fields:

text (str)
id (str, optional)
metadata (dictionary, optional)

and the following annotation layers:

entities (annotation type: LabeledSpan, target: text)
relations (annotation type: BinaryRelation, target: entities)

`ChemprotBigbioDocument` for `chemprot_bigbio_kb`

defines following fields:

text (str)
id (str, optional)
metadata (dictionary, optional)

and the following annotation layers:

passages (annotation type: LabeledSpan, target: text)
entities (annotation type: LabeledSpan, target: text)
relations (annotation type: BinaryRelation, target: entities)

See here for the annotation type definitions.

Document Converters

The dataset provides predefined document converters for the following target document types:

pie_modules.documents.TextDocumentWithLabeledSpansAndBinaryRelations for ChemprotDocument
pie_modules.documents.TextDocumentWithLabeledSpansBinaryRelationsAndLabeledPartitions for ChemprotBigbioDocument

See here for the document type definitions.