Column Meaning

#2
by TianlaiChen - opened

Hi @jglaser ,

Thanks for putting togehter all these datasets!

I wonder for these columns, what is the difference:

  • smiles vs smiles_can
  • affinity_uM vs affinity

Thanks a lot!

Hi @jglaser ,

Thanks for putting togehter all these datasets!

I wonder for these columns, what is the difference:

  • smiles vs smiles_can
  • affinity_uM vs affinity

Thanks a lot!

hi, did you figure out?

Hi,

smiles: raw SMIlES
smiles_can: smiles in canonical order
affinity_uM: Ki/Kd/IC50 in micro (mu) Molar
affinity: dimensionless affinity (centered and divided by standard deviation of dataset)

Best,
Jens

jglaser changed discussion status to closed

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