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sqtl

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test · 17.4k rows

chrom stringclasses 23 values	pos int64 12k 248M	ref stringclasses 4 values	alt stringclasses 4 values	pip float64 0 1	maf float64 0.01 0.5	consequence stringclasses 16 values	label bool 2 classes	tss_dist int64 0 5.43M	exon_dist int64 0 5.43M	match_group stringlengths 13 39
1	690,060	A	C	0.994126	0.03876	intron_variant	true	3,406	3,406	intron_variant_0
1	722,408	G	C	0.002822	0.198113	non_coding_transcript_exon_variant	false	35,754	35,754	non_coding_transcript_exon_variant_77
1	769,579	C	T	0.006539	0.046264	non_coding_transcript_exon_variant	false	82,925	82,925	non_coding_transcript_exon_variant_7
1	841,166	A	G	1	0.243043	intron_variant	true	82,755	82,755	intron_variant_1
1	917,495	C	T	0.90595	0.420124	splice_polypyrimidine_tract_variant	true	6,426	6,426	splice_polypyrimidine_tract_variant_0
1	920,949	C	G	0.915184	0.169975	non_coding_transcript_exon_variant	true	2,972	2,972	non_coding_transcript_exon_variant_0
1	946,870	C	A	1	0.036384	non_coding_transcript_exon_variant	true	7,595	325	non_coding_transcript_exon_variant_1
1	954,496	C	G	0.996345	0.015265	non_coding_transcript_exon_variant	true	4,758	414	non_coding_transcript_exon_variant_2
1	958,339	G	A	0.955819	0.092703	non_coding_transcript_exon_variant	true	915	588	non_coding_transcript_exon_variant_3
1	973,443	G	A	0.99993	0.164754	intron_variant	true	67	55	intron_variant_2
1	973,693	C	T	0.994036	0.36869	intron_variant	true	181	53	intron_variant_3
1	975,555	G	A	0.906873	0.212625	3_prime_UTR_variant	true	2,043	0	3_prime_UTR_variant_0
1	999,842	C	A	0.999064	0.480507	missense_variant	true	137	0	missense_variant_0
1	1,042,813	G	A	1	0.148702	intron_variant	true	8,707	424	intron_variant_4
1	1,049,886	C	T	0.971982	0.475837	splice_polypyrimidine_tract_variant	true	15,780	15	splice_polypyrimidine_tract_variant_1
1	1,053,552	G	C	0.99861	0.210086	non_coding_transcript_exon_variant	true	19,446	59	non_coding_transcript_exon_variant_4
1	1,057,980	C	A	0.991586	0.489207	intergenic_variant	true	16,324	1,862	intergenic_variant_0
1	1,065,797	G	C	0.970337	0.311989	intron_variant	true	8,507	5,168	intron_variant_5
1	1,067,054	C	T	0.918921	0.420029	intron_variant	true	7,250	3,911	intron_variant_6
1	1,091,327	C	A	1	0.441883	synonymous_variant	true	845	0	synonymous_variant_0
1	1,092,879	C	T	0.913843	0.138781	intron_variant	true	66	66	intron_variant_7
1	1,101,987	G	A	0.006837	0.178571	intron_variant	false	4,138	3,967	intron_variant_215
1	1,104,437	A	G	0.006837	0.178571	non_coding_transcript_exon_variant	false	1,688	1,517	non_coding_transcript_exon_variant_64
1	1,105,560	A	C	0.006837	0.178571	intron_variant	false	565	394	intron_variant_8
1	1,145,540	G	A	0.965705	0.050943	intergenic_variant	true	28,338	28,338	intergenic_variant_1
1	1,172,462	G	C	0.989862	0.095881	downstream_gene_variant	true	1,416	1,416	downstream_gene_variant_0
1	1,179,830	G	A	0.943782	0.122671	5_prime_UTR_variant	true	133	0	5_prime_UTR_variant_0
1	1,182,895	C	T	0.999942	0.089351	synonymous_variant	true	3,198	0	synonymous_variant_1
1	1,217,733	G	A	0.999944	0.121531	synonymous_variant	true	3,580	0	synonymous_variant_2
1	1,218,703	C	G	0.999251	0.020186	non_coding_transcript_exon_variant	true	4,550	64	non_coding_transcript_exon_variant_5
1	1,222,977	A	G	0.008725	0.121224	intron_variant	false	5,617	265	intron_variant_150
1	1,227,792	T	C	0.008725	0.124353	intron_variant	false	802	674	intron_variant_90
1	1,231,507	T	C	1	0.176727	intron_variant	true	492	383	intron_variant_8
1	1,237,527	C	T	0.979284	0.042797	intergenic_variant	true	5,290	2,486	intergenic_variant_2
1	1,252,487	C	A	0.006667	0.077982	intergenic_variant	false	5,765	1,423	intergenic_variant_36
1	1,287,310	C	T	0.999926	0.046943	intron_variant	true	201	11	intron_variant_9
1	1,287,315	G	C	0.999994	0.069876	intron_variant	true	206	16	intron_variant_10
1	1,303,112	G	A	0.008426	0.131429	intron_variant	false	146	48	intron_variant_294
1	1,327,586	C	T	0.0034	0.123732	synonymous_variant	false	2,345	0	synonymous_variant_3
1	1,335,795	A	G	0.008914	0.040881	3_prime_UTR_variant	false	3,625	0	3_prime_UTR_variant_29
1	1,365,514	C	A	0.006787	0.042453	intergenic_variant	false	3,737	3,737	intergenic_variant_30
1	1,374,562	C	T	1	0.024259	non_coding_transcript_exon_variant	true	593	117	non_coding_transcript_exon_variant_6
1	1,374,801	A	G	0.992443	0.071937	splice_polypyrimidine_tract_variant	true	354	0	splice_polypyrimidine_tract_variant_2
1	1,397,612	A	G	0.959468	0.012422	intron_variant	true	1,342	619	intron_variant_11
1	1,398,056	C	A	1	0.354701	intron_variant	true	898	175	intron_variant_12
1	1,424,459	C	A	0.999999	0.048713	intergenic_variant	true	1,410	1,410	intergenic_variant_3
1	1,451,550	C	T	0.981263	0.014785	intron_variant	true	1,636	494	intron_variant_13
1	1,461,719	G	A	0.978513	0.053512	intron_variant	true	10,044	802	intron_variant_14
1	1,490,122	A	G	0.99868	0.047321	non_coding_transcript_exon_variant	true	18,338	133	non_coding_transcript_exon_variant_7
1	1,512,287	A	G	0.006865	0.011396	missense_variant	false	112	0	missense_variant_29
1	1,609,890	C	T	0.940244	0.120433	intergenic_variant	true	5,608	5,608	intergenic_variant_4
1	1,619,986	T	C	0.931465	0.262361	intron_variant	true	2,426	2,271	intron_variant_15
1	1,624,723	C	T	0.922414	0.174702	intron_variant	true	921	70	intron_variant_16
1	1,625,951	G	A	0.999233	0.388854	non_coding_transcript_exon_variant	true	2,149	298	non_coding_transcript_exon_variant_8
1	1,627,156	G	A	0.990352	0.121787	synonymous_variant	true	1,331	0	synonymous_variant_3
1	1,629,332	G	T	0.976229	0.319328	intron_variant	true	843	21	intron_variant_17
1	1,677,707	C	T	0.9995	0.122004	intron_variant	true	15,015	861	intron_variant_18
1	1,688,409	C	G	0.998277	0.397233	intron_variant	true	4,313	2,565	intron_variant_19
1	1,689,221	G	A	0.999564	0.034989	intron_variant	true	3,501	1,753	intron_variant_20
1	1,689,465	A	G	0.954751	0.383309	intron_variant	true	3,257	1,509	intron_variant_21
1	1,704,310	C	A	0.99893	0.455333	synonymous_variant	true	11,515	0	synonymous_variant_4
1	1,714,932	G	T	0.998758	0.45377	intron_variant	true	7,897	1,412	intron_variant_22
1	1,730,405	G	C	0.003169	0.482269	non_coding_transcript_exon_variant	false	6,048	6,048	non_coding_transcript_exon_variant_74
1	1,744,499	C	T	0.967284	0.432353	non_coding_transcript_exon_variant	true	12,767	6,731	non_coding_transcript_exon_variant_9
1	1,756,043	G	T	0.002952	0.433556	non_coding_transcript_exon_variant	false	1,223	213	non_coding_transcript_exon_variant_9
1	1,756,945	G	A	0.998927	0.070958	non_coding_transcript_exon_variant	true	321	63	non_coding_transcript_exon_variant_10
1	1,825,898	G	A	0.982347	0.010448	intron_variant	true	6,385	399	intron_variant_23
1	1,916,092	C	T	0.008632	0.070492	non_coding_transcript_exon_variant	false	832	347	non_coding_transcript_exon_variant_10
1	1,918,989	A	G	0.999994	0.451465	3_prime_UTR_variant	true	192	54	3_prime_UTR_variant_1
1	1,944,419	C	G	0.008412	0.462857	missense_variant	false	25,140	0	missense_variant_38
1	1,958,061	C	T	0.979007	0.071225	intron_variant	true	32,866	1,057	intron_variant_24
1	2,065,711	G	A	0.987011	0.239726	intron_variant	true	7,749	6,120	intron_variant_25
1	2,107,385	G	A	0.999994	0.480209	intron_variant	true	2,646	2,490	intron_variant_26
1	2,145,827	G	A	0.005624	0.086124	intron_variant	false	10,837	198	intron_variant_321
1	2,146,811	T	G	0.955567	0.021298	intron_variant	true	11,821	703	intron_variant_27
1	2,156,665	A	G	0.002861	0.243207	non_coding_transcript_exon_variant	false	21,675	573	non_coding_transcript_exon_variant_62
1	2,181,827	G	A	0.905796	0.107332	splice_polypyrimidine_tract_variant	true	12,919	2,632	splice_polypyrimidine_tract_variant_3
1	2,189,679	C	T	1	0.368579	3_prime_UTR_variant	true	5,067	0	3_prime_UTR_variant_2
1	2,207,240	A	G	0.005074	0.406832	intron_variant	false	12,465	12,465	intron_variant_41
1	2,377,643	T	G	0.98177	0.465839	3_prime_UTR_variant	true	10,692	0	3_prime_UTR_variant_3
1	2,379,983	T	C	0.915597	0.017143	intron_variant	true	8,352	756	intron_variant_28
1	2,384,278	A	G	0.991135	0.43325	intron_variant	true	4,057	698	intron_variant_29
1	2,392,128	T	C	0.997265	0.435031	intron_variant	true	238	170	intron_variant_30
1	2,394,570	G	A	1	0.43277	5_prime_UTR_variant	true	565	0	5_prime_UTR_variant_1
1	2,396,376	C	T	0.999923	0.426638	intron_variant	true	2,371	505	intron_variant_31
1	2,479,350	C	T	0.968757	0.39743	non_coding_transcript_exon_variant	true	536	382	non_coding_transcript_exon_variant_11
1	2,564,775	C	T	0.004505	0.472826	intron_variant	false	4,093	276	intron_variant_286
1	2,567,179	G	T	0.00609	0.455163	intron_variant	false	6,497	1,797	intron_variant_22
1	2,568,341	G	A	0.006588	0.455163	intron_variant	false	7,659	2,959	intron_variant_233
1	2,800,059	C	T	0.008263	0.341761	missense_variant	false	1,632	0	missense_variant_47
1	3,022,133	T	G	0.008517	0.158951	synonymous_variant	false	666	0	synonymous_variant_25
1	3,028,107	T	A	0.007099	0.179443	intergenic_variant	false	6,640	5,204	intergenic_variant_67
1	3,060,252	T	C	0.009629	0.203833	non_coding_transcript_exon_variant	false	8,914	8,914	non_coding_transcript_exon_variant_104
1	3,061,479	G	C	0.999398	0.41753	non_coding_transcript_exon_variant	true	7,687	7,687	non_coding_transcript_exon_variant_12
1	3,063,362	C	T	1	0.016397	non_coding_transcript_exon_variant	true	5,804	5,804	non_coding_transcript_exon_variant_13
1	3,064,014	C	T	0.006839	0.143728	non_coding_transcript_exon_variant	false	5,152	5,152	non_coding_transcript_exon_variant_48
1	3,096,416	A	G	0.967549	0.22093	intron_variant	true	27,205	27,120	intron_variant_32
1	3,467,334	A	G	0.999232	0.098661	synonymous_variant	true	363	0	synonymous_variant_5
1	3,478,610	C	A	0.00963	0.06383	splice_region_variant	false	6,986	0	splice_region_variant_11
1	3,496,950	C	G	1	0.045882	intron_variant	true	233	36	intron_variant_33

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658 kB

Size of the auto-converted Parquet files:

658 kB

Number of rows:

17,382