model_config.json

{
    "bert_model": "biobert-base-cased",
    "do_lower": false,
    "max_seq_length": 128,
    "num_labels": 29,
    "label_map": 
        {
            "0"  :"O",
            "1"  :"B-ANATOMY",           
            "2"  :"I-ANATOMY",                           
            "3"  :"B-GENE",
            "4"  :"I-GENE",
            "5"  :"B-CHEMICAL",      
            "6"  :"I-CHEMICAL",      
            "7"  :"B-DISEASE",       
            "8"  :"I-DISEASE",
            "9"  :"B-PROTEIN",
            "10" :"I-PROTEIN",
            "11" :"B-ORGANISM",
            "12" :"I-ORGANISM",
            "13" :"B-CANCER",
            "14" :"I-CANCER",
            "15" :"B-ORGAN",
            "16" :"I-ORGAN",
            "17" :"B-CELL",
            "18" :"I-CELL",
            "19" :"B-TISSUE",
            "20" :"I-TISSUE",
            "21": "B-PATHOLOGY_TERM",
            "22": "I-PATHOLOGY_TERM",
            "23": "B-COMPLEX",
            "24": "I-COMPLEX",
            "25": "B-TAXON",
            "26": "I-TAXON",
            "27" :"[CLS]",
            "28" :"[SEP]"
            }
    }