Closes #11, refactorizes the the ncep_fnl download

.github/workflows/ci.yml

@@ -0,0 +1,40 @@
+name: CI Regression
+
+on: [push, pull_request]
+
+env:
+  SM_FRAMEWORK: "tf.keras"
+
+jobs:
+
+  test:
+    runs-on: ubuntu-latest
+    strategy:
+      max-parallel: 4
+      matrix:
+        # 3.6 will reach EoL in December 2021
+        # https://devguide.python.org/#status-of-python-branches
+        python-version: [ "3.8", "3.9" ]
+    steps:
+      - uses: actions/checkout@v2
+      - name: Setup python
+        uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+          architecture: x64
+      - name: Install test dependencies
+        run: |
+          sudo add-apt-repository ppa:ubuntugis/ubuntugis-unstable
+          sudo apt-get update
+          sudo apt-get install -y gdal-bin libgdal-dev build-essential
+          python -m pip install --upgrade pip
+          pip install https://github.com/rasterio/rasterio/archive/master.zip
+          pip install .[test]
+          pip install coveralls
+      - name: Run tests
+        run: coverage run -m pytest -v
+      - name: Submit coveralls
+        if: github.event_name != 'pull_request'
+        run: coveralls --service=github
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/codeql-analysis.yml

@@ -0,0 +1,74 @@
+# For most projects, this workflow file will not need changing; you simply need
+# to commit it to your repository.
+#
+# You may wish to alter this file to override the set of languages analyzed,
+# or to provide custom queries or build logic.
+#
+# ******** NOTE ********
+# We have attempted to detect the languages in your repository. Please check
+# the `language` matrix defined below to confirm you have the correct set of
+# supported CodeQL languages.
+#
+name: "CodeQL"
+
+on:
+  push:
+    branches: [ "main" ]
+  pull_request:
+    # The branches below must be a subset of the branches above
+    branches: [ "main" ]
+  schedule:
+    - cron: '29 15 * * 2'
+
+jobs:
+  analyze:
+    name: Analyze
+    runs-on: ubuntu-latest
+    permissions:
+      actions: read
+      contents: read
+      security-events: write
+
+    strategy:
+      fail-fast: false
+      matrix:
+        language: [ 'python' ]
+        # CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python', 'ruby' ]
+        # Learn more about CodeQL language support at https://aka.ms/codeql-docs/language-support
+
+    steps:
+    - name: Checkout repository
+      uses: actions/checkout@v3
+
+    # Initializes the CodeQL tools for scanning.
+    - name: Initialize CodeQL
+      uses: github/codeql-action/init@v2
+      with:
+        languages: ${{ matrix.language }}
+        # If you wish to specify custom queries, you can do so here or in a config file.
+        # By default, queries listed here will override any specified in a config file.
+        # Prefix the list here with "+" to use these queries and those in the config file.
+        
+        # Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
+        # queries: security-extended,security-and-quality
+
+        
+    # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
+    # If this step fails, then you should remove it and run the build manually (see below)
+    - name: Autobuild
+      uses: github/codeql-action/autobuild@v2
+
+    # ℹ️ Command-line programs to run using the OS shell.
+    # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
+
+    #   If the Autobuild fails above, remove it and uncomment the following three lines. 
+    #   modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
+
+    # - run: |
+    #   echo "Run, Build Application using script"
+    #   ./location_of_script_within_repo/buildscript.sh
+
+    - name: Perform CodeQL Analysis
+      uses: github/codeql-action/analyze@v2
+      with:
+        category: "/language:${{matrix.language}}"

.github/workflows/lint.yml

@@ -0,0 +1,18 @@
+name: Code style - PEP8
+
+on: [push, pull_request]
+
+jobs:
+
+  flake8-lint:
+    runs-on: ubuntu-latest
+    name: Lint
+    steps:
+      - name: Check out source repository
+        uses: actions/checkout@v2
+      - name: Set up Python environment
+        uses: actions/setup-python@v2
+        with:
+          python-version: "3.8"
+      - name: flake8 Lint
+        uses: py-actions/flake8@v2

wildfire_occurrence/model/data_download/ncep_fnl.py

@@ -215,7 +215,7 @@ if __name__ == "__main__":
         end_date = (start_date + datetime.timedelta(days=10))
 
         downloader = NCEP_FNL(
-            output_dir='/explore/nobackup/projects/ilab/projects/LobodaTFO/data/WRF_Data/NCEP_FNL',
+            output_dir='output/NCEP_FNL',
             start_date=start_date.strftime('%Y-%m-%d'),
             end_date=end_date.strftime('%Y-%m-%d')
         )