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fuxialexander commited on
Commit
4971d57
·
1 Parent(s): 1e0cf27

update

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Files changed (1) hide show
  1. Dockerfile +4 -2
Dockerfile CHANGED
@@ -25,8 +25,10 @@ RUN mkdir -p /app/.gcell_data && chown $MAMBA_USER:$MAMBA_USER /app/.gcell_data
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  # set the permission of the directory to 777
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  RUN mkdir -p /app/.gcell_data/genomes && chown $MAMBA_USER:$MAMBA_USER /app/.gcell_data/genomes
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  # skip the genome download
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- RUN touch /app/.gcell_data/genomes/hg38.fa
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- RUN touch /app/.gcell_data/genomes/hg38.fa.fai
 
 
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  RUN chmod -R 777 /app/.gcell_data
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  RUN chmod -R 777 /app/matplotlib_cache
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  RUN chmod -R 777 /app/
 
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  # set the permission of the directory to 777
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  RUN mkdir -p /app/.gcell_data/genomes && chown $MAMBA_USER:$MAMBA_USER /app/.gcell_data/genomes
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  # skip the genome download
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+ # download https://zenodo.org/records/14615146/files/gcell_data.tar.gz?download=1 extract it and copy it to /app/.gcell_data
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+ RUN wget https://zenodo.org/records/14615146/files/gcell_data.tar.gz?download=1 -O /app/gcell_data.tar.gz
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+ RUN tar -xzvf /app/gcell_data.tar.gz -C /app/.gcell_data
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+ RUN rm /app/gcell_data.tar.gz
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  RUN chmod -R 777 /app/.gcell_data
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  RUN chmod -R 777 /app/matplotlib_cache
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  RUN chmod -R 777 /app/