cogniveon commited on
Commit
764c9f8
1 Parent(s): bb3c455

feat: :man_dancing: YOLO

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Files changed (3) hide show
  1. app.py +90 -0
  2. patient_outcome_classifier.keras +0 -0
  3. requirements.txt +4 -0
app.py ADDED
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+ import torchaudio
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+ import torch
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+ import gradio as gr
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+ import keras
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+ import pandas as pd
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+
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+ from transformers import pipeline
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+
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+
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+ def get_murmur_from_recordings(audio):
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+ pipe = pipeline("audio-classification",
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+ model="cogniveon/eeem069_heart_murmur_classification")
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+
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+ sampling_rate, data = audio
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+ waveform = torch.tensor(data).float()
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+
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+ # Resample the audio to 16 kHz (if necessary)
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+ if sampling_rate != 16000:
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+ resampler = torchaudio.transforms.Resample(sampling_rate, 16000)
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+ waveform = resampler(waveform)
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+
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+ results = pipe(waveform.numpy())
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+
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+ sorted_results = sorted(results, key=lambda x: x['score'], reverse=True)
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+ label_scores = {item['label']: item['score'] for item in sorted_results}
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+ return label_scores
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+
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+
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+ def get_patient_outcome(age, sex, height, weight, is_pregnant, murmur):
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+ model = keras.models.load_model('patient_outcome_classifier.keras')
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+
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+ is_pregnant = 1 if is_pregnant else 0
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+ sex2int = {'Male': 0, 'Female': 1}
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+ sex = sex2int[sex]
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+
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+ age2int = {'Neonate': 0, 'Infant': 1, 'Child': 2, 'Adolescent': 3}
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+ age = age2int[age]
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+
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+ murmur = 0 if murmur == 'Absent' else (1 if murmur == 'Present' else 2)
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+
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+ data = pd.DataFrame({
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+ 'Age': float(age),
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+ 'Sex': float(sex),
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+ 'Height': float(height),
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+ 'Weight': float(weight),
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+ 'Pregnancy status': float(is_pregnant),
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+ 'Murmur': float(murmur),
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+ }, index=[0])
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+
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+ output = model.predict(data)[0]
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+ # 0 - Normal, 1 - Abnormal
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+ results = {
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+ 'Normal': output[0],
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+ 'Abnormal': output[1]
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+ }
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+
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+ return results
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+
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+
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+ def predict(audio, age, sex, height, weight, is_pregnant):
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+ assert audio is not None, 'Audio cannot be None'
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+
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+ murmur_scores = get_murmur_from_recordings(audio)
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+ murmur = "Unknown"
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+ if murmur_scores['Present'] > 0.70:
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+ murmur = "Present"
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+ if murmur_scores['Absent'] > 0.80:
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+ murmur = "Absent"
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+
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+ outcome = get_patient_outcome(
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+ age, sex, height, weight, is_pregnant, murmur)
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+
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+ return outcome
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+
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+
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+ demo = gr.Interface(
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+ fn=predict,
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+ inputs=[
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+ "audio",
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+ gr.Radio(label="Age", choices=[
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+ "Neonate", "Infant", "Child", "Adolescent"],
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+ value="Adolescent"),
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+ gr.Radio(label="Sex", choices=["Male", "Female"], value="Male"),
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+ gr.Number(label="Height", value="98.0"),
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+ gr.Number(label="Weight", value="38.1"),
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+ gr.Checkbox(label="Pregnant", value=False)
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+ ],
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+ outputs="label"
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+ )
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+ demo.launch()
patient_outcome_classifier.keras ADDED
Binary file (312 kB). View file
 
requirements.txt ADDED
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+ pandas
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+ torch
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+ torchaudio
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+ keras