Spaces:
Sleeping
Sleeping
ashishkgpian
commited on
Update app.py
Browse files
app.py
CHANGED
@@ -1,5 +1,7 @@
|
|
1 |
import gradio as gr
|
2 |
from transformers import pipeline
|
|
|
|
|
3 |
|
4 |
# Load the model
|
5 |
classifier = pipeline(
|
@@ -7,26 +9,34 @@ classifier = pipeline(
|
|
7 |
model="ashishkgpian/biobert_icd9_classifier_ehr"
|
8 |
)
|
9 |
|
|
|
|
|
|
|
10 |
def classify_symptoms(text):
|
11 |
try:
|
12 |
results = classifier(text, top_k=5)
|
13 |
formatted_results = []
|
14 |
for result in results:
|
|
|
|
|
|
|
15 |
formatted_results.append({
|
16 |
-
"ICD9 Code":
|
|
|
|
|
17 |
"Confidence": f"{result['score']:.2%}"
|
18 |
})
|
19 |
return formatted_results
|
20 |
except Exception as e:
|
21 |
return f"Error processing classification: {str(e)}"
|
22 |
|
23 |
-
# Enhanced CSS with better
|
24 |
custom_css = """
|
25 |
.gradio-container {
|
26 |
max-width: 1200px !important;
|
27 |
margin: auto !important;
|
28 |
padding: 2rem !important;
|
29 |
-
background-color: #
|
30 |
}
|
31 |
.main-container {
|
32 |
text-align: center;
|
@@ -37,12 +47,12 @@ custom_css = """
|
|
37 |
box-shadow: 0 2px 8px rgba(0, 0, 0, 0.1);
|
38 |
}
|
39 |
h1 {
|
40 |
-
color: #
|
41 |
font-size: 2.5rem !important;
|
42 |
margin-bottom: 0.5rem !important;
|
43 |
}
|
44 |
h3 {
|
45 |
-
color: #
|
46 |
font-size: 1.2rem !important;
|
47 |
font-weight: normal !important;
|
48 |
}
|
@@ -55,15 +65,15 @@ h3 {
|
|
55 |
}
|
56 |
textarea {
|
57 |
background: white !important;
|
58 |
-
color: #
|
59 |
-
border: 2px solid #
|
60 |
border-radius: 8px !important;
|
61 |
padding: 1rem !important;
|
62 |
font-size: 1.1rem !important;
|
63 |
min-height: 120px !important;
|
64 |
}
|
65 |
.submit-btn {
|
66 |
-
background-color: #
|
67 |
color: white !important;
|
68 |
padding: 0.8rem 2rem !important;
|
69 |
border-radius: 8px !important;
|
@@ -72,7 +82,7 @@ textarea {
|
|
72 |
transition: background-color 0.3s ease !important;
|
73 |
}
|
74 |
.submit-btn:hover {
|
75 |
-
background-color: #
|
76 |
}
|
77 |
.output-container {
|
78 |
background: white !important;
|
@@ -82,7 +92,7 @@ textarea {
|
|
82 |
}
|
83 |
.output-container pre {
|
84 |
background: #f8f9fa !important;
|
85 |
-
color: #
|
86 |
border-radius: 8px !important;
|
87 |
padding: 1rem !important;
|
88 |
}
|
@@ -93,6 +103,9 @@ textarea {
|
|
93 |
margin-top: 1rem !important;
|
94 |
box-shadow: 0 2px 8px rgba(0, 0, 0, 0.1) !important;
|
95 |
}
|
|
|
|
|
|
|
96 |
.footer {
|
97 |
text-align: center;
|
98 |
margin-top: 2rem;
|
@@ -100,7 +113,7 @@ textarea {
|
|
100 |
background: white;
|
101 |
border-radius: 10px;
|
102 |
box-shadow: 0 2px 8px rgba(0, 0, 0, 0.1);
|
103 |
-
color: #
|
104 |
}
|
105 |
"""
|
106 |
|
@@ -124,7 +137,7 @@ with gr.Blocks(css=custom_css) as demo:
|
|
124 |
|
125 |
with gr.Row(elem_classes=["output-container"]):
|
126 |
output = gr.JSON(
|
127 |
-
label="Suggested ICD9 Diagnostic Codes"
|
128 |
)
|
129 |
|
130 |
with gr.Row(elem_classes=["examples-container"]):
|
@@ -136,7 +149,8 @@ with gr.Blocks(css=custom_css) as demo:
|
|
136 |
["Elderly patient with chronic knee pain, reduced mobility, and signs of inflammation"]
|
137 |
],
|
138 |
inputs=input_text,
|
139 |
-
label="Example Clinical Cases"
|
|
|
140 |
)
|
141 |
|
142 |
submit_btn.click(fn=classify_symptoms, inputs=input_text, outputs=output)
|
|
|
1 |
import gradio as gr
|
2 |
from transformers import pipeline
|
3 |
+
import pandas as pd
|
4 |
+
import os
|
5 |
|
6 |
# Load the model
|
7 |
classifier = pipeline(
|
|
|
9 |
model="ashishkgpian/biobert_icd9_classifier_ehr"
|
10 |
)
|
11 |
|
12 |
+
# Load ICD9 codes data
|
13 |
+
icd9_data = pd.read_csv('')
|
14 |
+
|
15 |
def classify_symptoms(text):
|
16 |
try:
|
17 |
results = classifier(text, top_k=5)
|
18 |
formatted_results = []
|
19 |
for result in results:
|
20 |
+
code = result['label']
|
21 |
+
# Look up additional information
|
22 |
+
code_info = icd9_data[icd9_data['ICD9_CODE'] == code]
|
23 |
formatted_results.append({
|
24 |
+
"ICD9 Code": code,
|
25 |
+
"Short Title": code_info['SHORT_TITLE'].iloc[0] if not code_info.empty else "N/A",
|
26 |
+
"Long Title": code_info['LONG_TITLE'].iloc[0] if not code_info.empty else "N/A",
|
27 |
"Confidence": f"{result['score']:.2%}"
|
28 |
})
|
29 |
return formatted_results
|
30 |
except Exception as e:
|
31 |
return f"Error processing classification: {str(e)}"
|
32 |
|
33 |
+
# Enhanced CSS with violet theme and better text contrast
|
34 |
custom_css = """
|
35 |
.gradio-container {
|
36 |
max-width: 1200px !important;
|
37 |
margin: auto !important;
|
38 |
padding: 2rem !important;
|
39 |
+
background-color: #f5f3f7 !important;
|
40 |
}
|
41 |
.main-container {
|
42 |
text-align: center;
|
|
|
47 |
box-shadow: 0 2px 8px rgba(0, 0, 0, 0.1);
|
48 |
}
|
49 |
h1 {
|
50 |
+
color: #4a148c !important;
|
51 |
font-size: 2.5rem !important;
|
52 |
margin-bottom: 0.5rem !important;
|
53 |
}
|
54 |
h3 {
|
55 |
+
color: #6a1b9a !important;
|
56 |
font-size: 1.2rem !important;
|
57 |
font-weight: normal !important;
|
58 |
}
|
|
|
65 |
}
|
66 |
textarea {
|
67 |
background: white !important;
|
68 |
+
color: #000000 !important;
|
69 |
+
border: 2px solid #7b1fa2 !important;
|
70 |
border-radius: 8px !important;
|
71 |
padding: 1rem !important;
|
72 |
font-size: 1.1rem !important;
|
73 |
min-height: 120px !important;
|
74 |
}
|
75 |
.submit-btn {
|
76 |
+
background-color: #6a1b9a !important;
|
77 |
color: white !important;
|
78 |
padding: 0.8rem 2rem !important;
|
79 |
border-radius: 8px !important;
|
|
|
82 |
transition: background-color 0.3s ease !important;
|
83 |
}
|
84 |
.submit-btn:hover {
|
85 |
+
background-color: #4a148c !important;
|
86 |
}
|
87 |
.output-container {
|
88 |
background: white !important;
|
|
|
92 |
}
|
93 |
.output-container pre {
|
94 |
background: #f8f9fa !important;
|
95 |
+
color: #000000 !important;
|
96 |
border-radius: 8px !important;
|
97 |
padding: 1rem !important;
|
98 |
}
|
|
|
103 |
margin-top: 1rem !important;
|
104 |
box-shadow: 0 2px 8px rgba(0, 0, 0, 0.1) !important;
|
105 |
}
|
106 |
+
.example-text {
|
107 |
+
color: #000000 !important;
|
108 |
+
}
|
109 |
.footer {
|
110 |
text-align: center;
|
111 |
margin-top: 2rem;
|
|
|
113 |
background: white;
|
114 |
border-radius: 10px;
|
115 |
box-shadow: 0 2px 8px rgba(0, 0, 0, 0.1);
|
116 |
+
color: #4a148c;
|
117 |
}
|
118 |
"""
|
119 |
|
|
|
137 |
|
138 |
with gr.Row(elem_classes=["output-container"]):
|
139 |
output = gr.JSON(
|
140 |
+
label="Suggested ICD9 Diagnostic Codes with Descriptions"
|
141 |
)
|
142 |
|
143 |
with gr.Row(elem_classes=["examples-container"]):
|
|
|
149 |
["Elderly patient with chronic knee pain, reduced mobility, and signs of inflammation"]
|
150 |
],
|
151 |
inputs=input_text,
|
152 |
+
label="Example Clinical Cases",
|
153 |
+
elem_classes=["example-text"]
|
154 |
)
|
155 |
|
156 |
submit_btn.click(fn=classify_symptoms, inputs=input_text, outputs=output)
|