# read the doc: https://huggingface.co./docs/hub/spaces-sdks-docker # you will also find guides on how best to write your Dockerfile FROM python:3.8-slim # set language, format and stuff ENV LANG=C.UTF-8 LC_ALL=C.UTF-8 WORKDIR /code RUN apt-get update -y #RUN apt-get install -y python3 python3-pip RUN apt install git --fix-missing -y RUN apt install wget -y # installing other libraries RUN apt-get install python3-pip -y && \ apt-get -y install sudo RUN apt-get install curl -y RUN apt-get install nano -y RUN apt-get update && apt-get install -y git RUN apt-get install libblas-dev -y && apt-get install liblapack-dev -y RUN apt-get install gfortran -y RUN apt-get install libpng-dev -y RUN apt-get install python3-dev -y WORKDIR /code # install dependencies COPY ./requirements.txt /code/requirements.txt RUN pip install --no-cache-dir --upgrade -r /code/requirements.txt # resolve issue with tf==2.4 and gradio dependency collision issue RUN pip install --force-reinstall typing_extensions==4.7.1 # lower pydantic version to work with typing_extensions deprecation RUN pip install --force-reinstall "pydantic<2.0.0" # Install wget RUN apt install wget -y && \ apt install unzip # Set up a new user named "user" with user ID 1000 RUN useradd -m -u 1000 user # Switch to the "user" user USER user # Set home to the user's home directory ENV HOME=/home/user \ PATH=/home/user/.local/bin:$PATH # Set the working directory to the user's home directory WORKDIR $HOME/app # Copy the current directory contents into the container at $HOME/app setting the owner to the user COPY --chown=user . $HOME/app # Download pretrained parenchyma model RUN wget "https://github.com/raidionics/Raidionics-models/releases/download/1.2.0/Raidionics-MRI_Meningioma-ONNX-v12.zip" && \ unzip "Raidionics-MRI_Meningioma-ONNX-v12.zip" && mkdir -p resources/models/ && mv MRI_Meningioma/ resources/models/MRI_Meningioma/ RUN wget "https://github.com/raidionics/Raidionics-models/releases/download/1.2.0/Raidionics-MRI_LGGlioma-ONNX-v12.zip" && \ unzip "Raidionics-MRI_LGGlioma-ONNX-v12.zip" && mv MRI_LGGlioma/ resources/models/MRI_LGGlioma/ RUN wget "https://github.com/raidionics/Raidionics-models/releases/download/1.2.0/Raidionics-MRI_Metastasis-ONNX-v12.zip" && \ unzip "Raidionics-MRI_Metastasis-ONNX-v12.zip" && mv MRI_Metastasis/ resources/models/MRI_Metastasis/ RUN wget "https://github.com/raidionics/Raidionics-models/releases/download/1.2.0/Raidionics-MRI_GBM-ONNX-v12.zip" && \ unzip "Raidionics-MRI_GBM-ONNX-v12.zip" && mv MRI_GBM/ resources/models/MRI_GBM/ RUN wget "https://github.com/raidionics/Raidionics-models/releases/download/1.2.0/Raidionics-MRI_Brain-ONNX-v12.zip" && \ unzip "Raidionics-MRI_Brain-ONNX-v12.zip" && mv MRI_Brain/ resources/models/MRI_Brain/ RUN rm -r *.zip # Download test sample RUN wget "https://github.com/andreped/neukit/releases/download/test-data/RegLib_C01_1.nii" && \ wget "https://github.com/andreped/neukit/releases/download/test-data/RegLib_C01_2.nii" # CMD ["/bin/bash"] CMD ["python3", "app.py"]