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Yossefahmed68
commited on
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4475814
1
Parent(s):
5f46f55
Dailymed
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Daily med
ADDED
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import requests
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import re
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import xml.etree.ElementTree as ET
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# Documentation to follow: https://dailymed.nlm.nih.gov/dailymed/webservices-help/v2/spls_setid_api.cfm
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# Set up the drug object
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class Drug:
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def __init__(self, name):
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self.name = name
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self.spl = self.request_spls(name_type='both', return_format='json')
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self.spl_xml = self.request_spl_xml()
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# Helper
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def extract_text_in_parentheses(self, text):
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pattern = r'\((.*?)\)' # Regular expression pattern to match text within parentheses
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match = re.search(pattern, text)
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if match:
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return match.group(1)
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return None
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def request_spls(self, name_type='both', return_format='json'):
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base_url = 'https://dailymed.nlm.nih.gov/dailymed/services/v2/spls'
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endpoint = f'{base_url}.{return_format}'
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params = {
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'drug_name': self.extract_text_in_parentheses(self.name),
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'name_type': name_type
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}
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response = requests.get(endpoint, params=params)
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if response.status_code == 200:
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return response.json() if return_format == 'json' else response.text
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else:
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print(f'Request failed with status code {response.status_code}.')
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return None
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def request_spl_xml(self):
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if self.spl is None:
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return None
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set_id = self.spl['data'][0]['setid']
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endpoint = f'https://dailymed.nlm.nih.gov/dailymed/services/v2/spls/{set_id}.xml'
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response = requests.get(endpoint)
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if response.status_code == 200:
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return response.text
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else:
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print(f'Request failed with status code {response.status_code}.')
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return None
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def traverse_xml(self):
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if self.spl_xml is None:
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return None
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root = ET.fromstring(self.request_spl_xml())
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namespaces = {'ns': 'urn:hl7-org:v3'}
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ingredients = root.findall('.//ns:ingredient', namespaces=namespaces)
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ingredient_data = []
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for ingredient in ingredients:
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ingredient_data.append({
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'name': ingredient.find('.//ns:quantity/ns:ingredientSubstance', namespaces=namespaces),
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#'strength': ingredient.find('.//ns:strength', namespaces=namespaces).text,
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#'code': ingredient.find('.//ns:code', namespaces=namespaces).attrib['code']
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})
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return ingredient_data
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###### Testing the function outputs ######
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# drug = Drug('drospirenone-ethinyl estradiol (YAZ) 3-0.02 MG per tablet')
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# n = Drug.traverse_xml(drug)
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# print(n)
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