atomic-image-explorer / bokeh_plot.py
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import pickle
import pandas as pd
from bokeh.plotting import figure
from bokeh.models import ColumnDataSource, HoverTool, Div
from bokeh.layouts import column
import logging
# Configure logging
logging.basicConfig(level=logging.INFO)
logger = logging.getLogger(__name__)
def create_plot():
# Load preprocessed data
logger.info("Loading preprocessed data...")
with open('processed_data.pkl', 'rb') as f:
df = pickle.load(f)
with open('contour_data.pkl', 'rb') as f:
contour_data = pickle.load(f)
logger.info("Data loaded successfully.")
logger.info("Creating Bokeh plot...")
p = figure(width=1280, height=800, title="UMAP projection of embeddings")
# Load contour data
contour_source = ColumnDataSource(data=dict(xs=contour_data['xs'],
ys=contour_data['ys'],
color=contour_data['color']))
contour_renderer = p.patches(xs="xs", ys="ys", source=contour_source, fill_alpha=0.3, line_color=None, fill_color="color")
# Scatter plot
source = ColumnDataSource(df)
scatter_renderer = p.scatter('x', 'y', size=3, source=source, fill_alpha=0.2, line_alpha=0.1)
# Configure hover tool to display images
hover = HoverTool(renderers=[scatter_renderer])
hover.tooltips = """
<div>
<div>
<strong>Image ID:</strong> @id
</div>
<div>
<strong>Cap_ref:</strong> @caption
</div>
<div>
<strong>URL:</strong> @url
</div>
<div>
<img
src="data:image/jpeg;base64,@image_b64" height="200" alt="Image"
style="float: left; margin: 0px 15px 15px 0px;"
border="2"
></img>
</div>
</div>
"""
p.add_tools(hover)
return p