MingGatsby commited on
Commit
2c04947
1 Parent(s): edc1fd8

Update app.py

Browse files
Files changed (1) hide show
  1. app.py +8 -8
app.py CHANGED
@@ -105,26 +105,26 @@ WINDOW_WIDTH_MAX = 3000
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  # Evaluation Transforms
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  eval_transforms = Compose(
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  [
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- LoadImage(image_only=True),
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  AsChannelFirst(),
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  ScaleIntensityRangePercentiles(lower=20, upper=80, b_min=0.0, b_max=1.0, clip=False, relative=True),
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  Resize(spatial_size=SPATIAL_SIZE)
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  ]
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  )
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- # CAM Original Transforms
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- cam_original_transforms = Compose(
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  [
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- LoadImage(image_only=True),
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  AsChannelFirst(),
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  Resize(spatial_size=SPATIAL_SIZE)
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  ]
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  )
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- # CAM Original Transforms
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  original_transforms = Compose(
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  [
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- LoadImage(image_only=True),
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  AsChannelFirst()
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  ]
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  )
@@ -210,7 +210,7 @@ if uploaded_ct_file is not None:
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  )
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  # Load the original DICOM image for display
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- display_image_tensor = cam_original_transforms(temp_file.name).unsqueeze(0).to(device)
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  display_image = display_image_tensor.squeeze()
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  # Transform the image and apply windowing
@@ -277,7 +277,7 @@ if uploaded_mri_file is not None:
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  )
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  # Load the original DICOM image for display
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- display_image_tensor = cam_original_transforms(temp_file.name).unsqueeze(0).to(device)
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  display_image = display_image_tensor.squeeze()
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  # Transform the image and apply windowing
 
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  # Evaluation Transforms
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  eval_transforms = Compose(
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  [
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+ LoadImage(image_only=True, reader="ITKReader"),
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  AsChannelFirst(),
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  ScaleIntensityRangePercentiles(lower=20, upper=80, b_min=0.0, b_max=1.0, clip=False, relative=True),
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  Resize(spatial_size=SPATIAL_SIZE)
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  ]
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  )
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+ # CAM Transforms
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+ cam_transforms = Compose(
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  [
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+ LoadImage(image_only=True, reader="ITKReader"),
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  AsChannelFirst(),
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  Resize(spatial_size=SPATIAL_SIZE)
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  ]
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  )
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+ # Original Transforms
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  original_transforms = Compose(
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  [
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+ LoadImage(image_only=True, reader="ITKReader"),
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  AsChannelFirst()
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  ]
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  )
 
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  )
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  # Load the original DICOM image for display
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+ display_image_tensor = cam_transforms(temp_file.name).unsqueeze(0).to(device)
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  display_image = display_image_tensor.squeeze()
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  # Transform the image and apply windowing
 
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  )
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  # Load the original DICOM image for display
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+ display_image_tensor = cam_transforms(temp_file.name).unsqueeze(0).to(device)
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  display_image = display_image_tensor.squeeze()
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  # Transform the image and apply windowing