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scvi-tools
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tabula-sapiens-pancreas-scanvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCANVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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  29. lightning_logs/version_2/hparams.yaml +1 -0
  30. metrics.json +5 -0
  31. model.pt +2 -2
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+ "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.43 | 1.57 |\n| Pearson Correlation | 0.86 | 0.84 |\n| Spearman Correlation | 0.89 | 0.87 |\n| R\u00b2 (R-Squared) | 0.66 | 0.56 |",
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+ "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 13.08 |\n| Pearson Correlation | 0.70 |\n| Spearman Correlation | 0.75 |\n| R\u00b2 (R-Squared) | -0.24 |",
4
+ "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| pancreatic acinar cell | 0.96 | 0.62 | 0.75 | 0.94 | 0.07 | 0.86 | 5534.00 |\n| pancreatic ductal cell | 0.94 | 0.92 | 0.75 | 0.97 | 0.49 | 0.93 | 2431.00 |\n| endothelial cell | 0.90 | 1.27 | 0.77 | 0.96 | 0.49 | 0.94 | 2100.00 |\n| myeloid cell | 0.84 | 1.40 | 0.72 | 0.96 | 0.51 | 0.94 | 1862.00 |\n| T cell | 0.91 | 2.61 | 0.68 | 0.85 | 0.37 | 0.83 | 573.00 |\n| pancreatic stellate cell | 0.87 | 2.17 | 0.73 | 0.91 | 0.50 | 0.88 | 393.00 |\n| B cell | 0.60 | 4.42 | 0.65 | 0.80 | 0.26 | 0.73 | 144.00 |\n| type B pancreatic cell | 0.76 | 3.50 | 0.69 | 0.82 | 0.21 | 0.83 | 99.00 |\n| pancreatic A cell | 0.81 | 4.34 | 0.72 | 0.81 | 0.22 | 0.70 | 71.00 |\n| pancreatic PP cell | 0.70 | 4.69 | 0.72 | 0.83 | 0.14 | 0.73 | 71.00 |\n| plasma cell | 0.69 | 3.36 | 0.67 | 0.73 | 0.20 | 0.84 | 63.00 |\n| mast cell | 0.65 | 6.82 | 0.67 | 0.82 | 0.14 | 0.68 | 53.00 |\n| fibroblast | 0.74 | 4.00 | 0.67 | 0.71 | 0.35 | 0.75 | 47.00 |\n| mature NK T cell | 0.73 | 4.01 | 0.69 | 0.67 | 0.35 | 0.71 | 47.00 |"
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