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tabula_sapiens_Mammary

Joblib
popV
biology
genomics
single-cell
anndata_version:0.11.3
python_version:3.11.11
tissue: Mammary
Model card Files Community
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@@ -32,45 +32,45 @@ computed on a 10% random subset of the data that was not used for training.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | luminal epithelial cell of mammary gland | 1539 | 0.99 | 0.95 | 1.00 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 1.00 |
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- | fibroblast of breast | 521 | 0.99 | 0.96 | 0.99 | 0.98 | 0.00 | 0.98 | 0.98 | 0.98 | 0.98 |
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- | CD8-positive, alpha-beta T cell | 268 | 0.91 | 0.91 | 0.90 | 0.83 | 0.00 | 0.88 | 0.91 | 0.92 | 0.93 |
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- | basal cell | 186 | 0.96 | 0.91 | 0.98 | 0.97 | 0.00 | 0.94 | 0.97 | 0.95 | 0.98 |
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- | progenitor cell of mammary luminal epithelium | 160 | 0.98 | 0.38 | 0.98 | 0.99 | 0.00 | 0.97 | 0.98 | 0.98 | 0.99 |
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- | endothelial cell | 168 | 0.97 | 0.97 | 0.98 | 0.98 | 0.00 | 0.98 | 0.98 | 0.97 | 0.99 |
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- | macrophage | 71 | 0.97 | 0.93 | 0.99 | 0.99 | 0.00 | 0.99 | 0.98 | 0.97 | 0.99 |
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- | CD4-positive, alpha-beta T cell | 78 | 0.69 | 0.67 | 0.64 | 0.25 | 0.00 | 0.63 | 0.74 | 0.80 | 0.76 |
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- | vascular associated smooth muscle cell | 53 | 0.94 | 0.94 | 0.96 | 0.93 | 0.00 | 0.92 | 0.93 | 0.90 | 0.95 |
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- | plasma cell | 25 | 1.00 | 0.94 | 0.96 | 0.94 | 0.00 | 0.72 | 0.98 | 0.96 | 1.00 |
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- | T cell | 19 | 0.49 | 0.29 | 0.38 | 0.00 | 0.00 | 0.45 | 0.49 | 0.56 | 0.49 |
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- | mast cell | 3 | 0.57 | 0.50 | 1.00 | 0.80 | 0.00 | 0.67 | 0.86 | 1.00 | 0.86 |
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- | B cell | 1 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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- | mature NK T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | basophil | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | natural killer cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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- | regulatory T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  The train accuracies are computed on the training data.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | luminal epithelial cell of mammary gland | 13893 | 0.99 | 0.93 | 1.00 | 1.00 | 0.00 | 0.98 | 0.99 | 0.99 | 1.00 |
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- | fibroblast of breast | 4749 | 0.99 | 0.94 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |
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- | CD8-positive, alpha-beta T cell | 2385 | 0.90 | 0.89 | 0.94 | 0.87 | 0.00 | 0.92 | 0.92 | 0.94 | 0.96 |
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- | basal cell | 1633 | 0.96 | 0.83 | 0.98 | 0.97 | 0.00 | 0.93 | 0.97 | 0.96 | 0.98 |
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- | progenitor cell of mammary luminal epithelium | 1534 | 0.99 | 0.00 | 0.99 | 0.99 | 0.00 | 0.98 | 0.97 | 0.98 | 1.00 |
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- | endothelial cell | 1366 | 0.97 | 0.96 | 0.98 | 0.99 | 0.00 | 0.97 | 0.98 | 0.97 | 0.99 |
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- | macrophage | 614 | 0.96 | 0.95 | 0.99 | 0.97 | 0.00 | 0.98 | 0.98 | 0.97 | 0.99 |
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- | CD4-positive, alpha-beta T cell | 603 | 0.66 | 0.60 | 0.77 | 0.43 | 0.00 | 0.78 | 0.81 | 0.86 | 0.88 |
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- | vascular associated smooth muscle cell | 513 | 0.95 | 0.93 | 0.97 | 0.95 | 0.00 | 0.94 | 0.96 | 0.94 | 0.97 |
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- | plasma cell | 268 | 0.98 | 0.85 | 0.98 | 0.91 | 0.00 | 0.73 | 0.99 | 0.97 | 0.99 |
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- | T cell | 204 | 0.61 | 0.17 | 0.67 | 0.42 | 0.00 | 0.64 | 0.82 | 0.83 | 0.86 |
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- | mast cell | 34 | 0.55 | 0.00 | 0.89 | 0.81 | 0.00 | 0.77 | 0.99 | 0.93 | 0.99 |
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- | B cell | 14 | 0.00 | 0.53 | 1.00 | 0.30 | 0.00 | 0.88 | 1.00 | 0.97 | 1.00 |
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- | mature NK T cell | 13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.73 | 1.00 | 1.00 | 0.76 |
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- | basophil | 12 | 0.00 | 0.15 | 0.40 | 0.35 | 0.00 | 0.65 | 1.00 | 0.89 | 0.91 |
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- | natural killer cell | 6 | 0.00 | 0.00 | 0.29 | 0.00 | 0.00 | 0.57 | 0.86 | 1.00 | 0.50 |
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- | regulatory T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 0.00 |
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  </details>
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | luminal epithelial cell of mammary gland | 1535 | 0.99 | 0.95 | 1.00 | 0.99 | 0.00 | 0.97 | 0.99 | 0.99 | 1.00 |
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+ | fibroblast of breast | 530 | 0.98 | 0.97 | 0.99 | 0.98 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |
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+ | CD8-positive, alpha-beta T cell | 262 | 0.89 | 0.90 | 0.90 | 0.85 | 0.00 | 0.85 | 0.89 | 0.90 | 0.92 |
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+ | basal cell | 204 | 0.98 | 0.94 | 0.98 | 0.96 | 0.00 | 0.92 | 0.99 | 0.97 | 0.99 |
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+ | progenitor cell of mammary luminal epithelium | 173 | 0.99 | 0.34 | 1.00 | 0.99 | 0.00 | 0.96 | 0.99 | 0.98 | 1.00 |
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+ | endothelial cell | 151 | 0.97 | 0.97 | 0.98 | 0.97 | 0.00 | 0.96 | 0.97 | 0.97 | 0.98 |
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+ | macrophage | 72 | 0.95 | 0.96 | 0.97 | 0.97 | 0.00 | 0.96 | 0.98 | 0.96 | 0.98 |
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+ | CD4-positive, alpha-beta T cell | 68 | 0.72 | 0.65 | 0.69 | 0.27 | 0.00 | 0.64 | 0.69 | 0.76 | 0.77 |
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+ | vascular associated smooth muscle cell | 47 | 0.94 | 0.96 | 0.97 | 0.95 | 0.00 | 0.91 | 0.92 | 0.91 | 0.97 |
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+ | plasma cell | 28 | 1.00 | 0.96 | 0.96 | 0.91 | 0.00 | 0.70 | 0.98 | 1.00 | 1.00 |
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+ | T cell | 20 | 0.50 | 0.19 | 0.37 | 0.29 | 0.00 | 0.51 | 0.55 | 0.51 | 0.56 |
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+ | mast cell | 2 | 0.40 | 0.00 | 1.00 | 0.00 | 0.00 | 0.33 | 0.80 | 0.80 | 0.80 |
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+ | B cell | 1 | 0.00 | 1.00 | 1.00 | 0.67 | 0.00 | 1.00 | 1.00 | 0.00 | 1.00 |
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+ | mature NK T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 | 0.00 |
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  | basophil | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | natural killer cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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+ | regulatory T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  The train accuracies are computed on the training data.
54
 
55
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
56
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
57
+ | luminal epithelial cell of mammary gland | 13897 | 0.99 | 0.94 | 1.00 | 0.99 | 0.00 | 0.97 | 0.99 | 0.99 | 1.00 |
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+ | fibroblast of breast | 4740 | 0.97 | 0.96 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
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+ | CD8-positive, alpha-beta T cell | 2391 | 0.90 | 0.90 | 0.94 | 0.87 | 0.00 | 0.90 | 0.92 | 0.94 | 0.96 |
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+ | basal cell | 1615 | 0.94 | 0.90 | 0.98 | 0.97 | 0.00 | 0.92 | 0.97 | 0.96 | 0.98 |
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+ | progenitor cell of mammary luminal epithelium | 1521 | 0.99 | 0.04 | 0.99 | 0.99 | 0.00 | 0.94 | 0.98 | 0.98 | 0.99 |
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+ | endothelial cell | 1383 | 0.97 | 0.97 | 0.98 | 0.98 | 0.00 | 0.97 | 0.97 | 0.97 | 0.98 |
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+ | macrophage | 613 | 0.96 | 0.95 | 0.98 | 0.97 | 0.00 | 0.97 | 0.98 | 0.98 | 0.98 |
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+ | CD4-positive, alpha-beta T cell | 613 | 0.68 | 0.64 | 0.81 | 0.44 | 0.00 | 0.76 | 0.83 | 0.87 | 0.89 |
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+ | vascular associated smooth muscle cell | 519 | 0.94 | 0.93 | 0.97 | 0.94 | 0.00 | 0.94 | 0.96 | 0.94 | 0.97 |
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+ | plasma cell | 265 | 0.98 | 0.88 | 0.98 | 0.89 | 0.00 | 0.69 | 0.99 | 0.98 | 0.99 |
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+ | T cell | 203 | 0.56 | 0.19 | 0.66 | 0.31 | 0.00 | 0.64 | 0.80 | 0.81 | 0.85 |
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+ | mast cell | 35 | 0.55 | 0.09 | 0.87 | 0.68 | 0.00 | 0.93 | 1.00 | 0.97 | 0.99 |
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+ | B cell | 14 | 0.00 | 0.73 | 1.00 | 0.48 | 0.00 | 0.93 | 1.00 | 1.00 | 1.00 |
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+ | mature NK T cell | 13 | 0.00 | 0.00 | 0.27 | 0.00 | 0.00 | 0.51 | 1.00 | 1.00 | 0.70 |
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+ | basophil | 12 | 0.00 | 0.11 | 0.29 | 0.22 | 0.00 | 0.63 | 0.96 | 0.92 | 0.96 |
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+ | natural killer cell | 6 | 0.00 | 0.00 | 0.29 | 0.00 | 0.00 | 0.56 | 0.86 | 1.00 | 0.29 |
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+ | regulatory T cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.29 | 1.00 | 1.00 | 0.00 |
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  </details>
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