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@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| luminal epithelial cell of mammary gland | 1543 | 0.99 | 0.95 | 1.00 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 1.00 |\n| fibroblast of breast | 525 | 0.98 | 0.97 | 0.99 | 0.99 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |\n| CD8-positive, alpha-beta T cell | 270 | 0.88 | 0.92 | 0.91 | 0.83 | 0.00 | 0.87 | 0.89 | 0.91 | 0.92 |\n| basal cell | 196 | 0.97 | 0.93 | 0.97 | 0.97 | 0.00 | 0.94 | 0.97 | 0.96 | 0.99 |\n| progenitor cell of mammary luminal epithelium | 166 | 0.99 | 0.31 | 0.99 | 0.99 | 0.00 | 0.97 | 0.97 | 0.98 | 0.99 |\n| endothelial cell | 162 | 0.96 | 0.96 | 0.98 | 0.98 | 0.00 | 0.95 | 0.97 | 0.97 | 0.98 |\n| macrophage | 66 | 0.95 | 0.96 | 0.98 | 0.99 | 0.00 | 0.96 | 0.99 | 0.97 | 0.98 |\n| CD4-positive, alpha-beta T cell | 68 | 0.67 | 0.74 | 0.69 | 0.25 | 0.00 | 0.56 | 0.67 | 0.77 | 0.73 |\n| vascular associated smooth muscle cell | 48 | 0.91 | 0.96 | 0.97 | 0.94 | 0.00 | 0.83 | 0.86 | 0.90 | 0.96 |\n| plasma cell | 27 | 1.00 | 0.90 | 0.96 | 0.98 | 0.00 | 0.81 | 0.98 | 1.00 | 1.00 |\n| T cell | 17 | 0.45 | 0.15 | 0.30 | 0.30 | 0.00 | 0.44 | 0.35 | 0.45 | 0.44 |\n| mast cell | 3 | 0.50 | 0.00 | 0.86 | 1.00 | 0.00 | 0.33 | 1.00 | 1.00 | 1.00 |\n| B cell | 1 | 0.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 0.00 | 1.00 |\n| mature NK T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| basophil | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| natural killer cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| regulatory T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| luminal epithelial cell of mammary gland | 13889 | 0.99 | 0.93 | 1.00 | 1.00 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| fibroblast of breast | 4745 | 0.98 | 0.95 | 0.99 | 0.99 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |\n| CD8-positive, alpha-beta T cell | 2383 | 0.89 | 0.90 | 0.94 | 0.87 | 0.00 | 0.88 | 0.93 | 0.94 | 0.96 |\n| basal cell | 1623 | 0.96 | 0.87 | 0.98 | 0.98 | 0.00 | 0.93 | 0.96 | 0.95 | 0.97 |\n| progenitor cell of mammary luminal epithelium | 1528 | 0.99 | 0.01 | 0.99 | 0.99 | 0.00 | 0.97 | 0.97 | 0.98 | 0.99 |\n| endothelial cell | 1372 | 0.97 | 0.97 | 0.98 | 0.99 | 0.00 | 0.95 | 0.97 | 0.97 | 0.98 |\n| macrophage | 619 | 0.96 | 0.96 | 0.99 | 0.98 | 0.00 | 0.97 | 0.98 | 0.97 | 0.98 |\n| CD4-positive, alpha-beta T cell | 613 | 0.66 | 0.64 | 0.79 | 0.43 | 0.00 | 0.71 | 0.82 | 0.87 | 0.88 |\n| vascular associated smooth muscle cell | 518 | 0.95 | 0.92 | 0.97 | 0.97 | 0.00 | 0.91 | 0.95 | 0.93 | 0.96 |\n| plasma cell | 266 | 0.97 | 0.84 | 0.98 | 0.94 | 0.00 | 0.80 | 0.99 | 0.97 | 0.99 |\n| T cell | 206 | 0.63 | 0.20 | 0.67 | 0.46 | 0.00 | 0.67 | 0.85 | 0.84 | 0.88 |\n| mast cell | 34 | 0.60 | 0.04 | 0.89 | 0.81 | 0.00 | 0.43 | 1.00 | 1.00 | 0.99 |\n| B cell | 14 | 0.00 | 0.60 | 1.00 | 0.79 | 0.00 | 0.80 | 1.00 | 0.97 | 1.00 |\n| mature NK T cell | 13 | 0.00 | 0.00 | 0.00 | 0.47 | 0.00 | 0.70 | 1.00 | 1.00 | 0.92 |\n| basophil | 12 | 0.00 | 0.23 | 0.40 | 0.14 | 0.00 | 0.65 | 1.00 | 1.00 | 0.91 |\n| natural killer cell | 6 | 0.00 | 0.00 | 0.29 | 0.00 | 0.00 | 0.46 | 0.86 | 1.00 | 0.50 |\n| regulatory T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.11 | 1.00 | 1.00 | 0.00 |"
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celltypist.pkl

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checkpoint

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pynndescent_index.joblib

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scanvi/model.pt

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scvi/model.pt

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scvi_knn_classifier.joblib

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svm_classifier_cuml.joblib

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xgboost_classifier.model

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