| { | |
| "query_accuracy": "| Cell Type | N cells | celltypist | knn on bbknn | knn on harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| luminal epithelial cell of mammary gland | 1529 | 0.99 | 0.94 | 1.00 | 1.00 | 0.00 | 0.88 | 0.99 | 0.99 | 1.00 |\n| fibroblast of breast | 544 | 0.99 | 0.96 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| CD8-positive, alpha-beta T cell | 260 | 0.89 | 0.89 | 0.90 | 0.81 | 0.00 | 0.79 | 0.86 | 0.90 | 0.91 |\n| basal cell | 194 | 0.94 | 0.95 | 0.97 | 0.98 | 0.00 | 0.96 | 0.97 | 0.96 | 0.97 |\n| progenitor cell of mammary luminal epithelium | 174 | 0.99 | 0.22 | 1.00 | 1.00 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |\n| endothelial cell | 148 | 0.97 | 0.96 | 0.98 | 0.99 | 0.00 | 0.95 | 0.97 | 0.97 | 0.98 |\n| macrophage | 70 | 0.95 | 0.96 | 0.98 | 0.98 | 0.00 | 0.96 | 0.97 | 0.97 | 0.97 |\n| CD4-positive, alpha-beta T cell | 70 | 0.66 | 0.66 | 0.63 | 0.20 | 0.00 | 0.54 | 0.59 | 0.76 | 0.71 |\n| vascular associated smooth muscle cell | 46 | 0.96 | 0.96 | 0.97 | 0.95 | 0.00 | 0.95 | 0.89 | 0.90 | 0.97 |\n| plasma cell | 32 | 1.00 | 0.92 | 1.00 | 0.97 | 0.00 | 0.83 | 0.98 | 1.00 | 1.00 |\n| T cell | 21 | 0.50 | 0.06 | 0.41 | 0.00 | 0.00 | 0.44 | 0.51 | 0.54 | 0.51 |\n| mast cell | 2 | 0.29 | 0.00 | 0.67 | 1.00 | 0.00 | 0.80 | 0.80 | 1.00 | 0.80 |\n| B cell | 2 | 0.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.33 | 0.67 | 0.67 | 1.00 |\n| mature NK T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| basophil | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| natural killer cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 1.00 | 0.00 |\n| regulatory T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |", | |
| "ref_accuracy": "| Cell Type | N cells | celltypist | knn on bbknn | knn on harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| luminal epithelial cell of mammary gland | 13903 | 0.99 | 0.94 | 1.00 | 1.00 | 0.00 | 0.89 | 0.99 | 0.99 | 0.99 |\n| fibroblast of breast | 4726 | 0.99 | 0.93 | 0.99 | 0.99 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |\n| CD8-positive, alpha-beta T cell | 2393 | 0.90 | 0.90 | 0.94 | 0.87 | 0.00 | 0.84 | 0.92 | 0.94 | 0.96 |\n| basal cell | 1625 | 0.93 | 0.90 | 0.98 | 0.97 | 0.00 | 0.95 | 0.96 | 0.96 | 0.97 |\n| progenitor cell of mammary luminal epithelium | 1520 | 0.99 | 0.02 | 0.99 | 0.99 | 0.00 | 0.97 | 0.98 | 0.98 | 0.99 |\n| endothelial cell | 1386 | 0.96 | 0.96 | 0.98 | 0.99 | 0.00 | 0.94 | 0.98 | 0.97 | 0.98 |\n| macrophage | 615 | 0.96 | 0.96 | 0.98 | 0.98 | 0.00 | 0.97 | 0.98 | 0.98 | 0.98 |\n| CD4-positive, alpha-beta T cell | 611 | 0.66 | 0.62 | 0.77 | 0.45 | 0.00 | 0.65 | 0.80 | 0.86 | 0.88 |\n| vascular associated smooth muscle cell | 520 | 0.95 | 0.93 | 0.97 | 0.95 | 0.00 | 0.94 | 0.94 | 0.93 | 0.96 |\n| plasma cell | 261 | 0.98 | 0.85 | 0.98 | 0.95 | 0.00 | 0.81 | 0.99 | 0.97 | 0.99 |\n| T cell | 202 | 0.58 | 0.18 | 0.66 | 0.35 | 0.00 | 0.68 | 0.84 | 0.84 | 0.89 |\n| mast cell | 35 | 0.61 | 0.00 | 0.89 | 0.81 | 0.00 | 0.84 | 1.00 | 0.93 | 1.00 |\n| B cell | 13 | 0.00 | 0.82 | 0.92 | 0.64 | 0.00 | 0.30 | 1.00 | 1.00 | 1.00 |\n| mature NK T cell | 13 | 0.00 | 0.00 | 0.00 | 0.14 | 0.00 | 0.63 | 1.00 | 1.00 | 0.76 |\n| basophil | 12 | 0.00 | 0.11 | 0.38 | 0.14 | 0.00 | 0.01 | 1.00 | 1.00 | 0.96 |\n| natural killer cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.31 | 1.00 | 1.00 | 0.33 |\n| regulatory T cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 0.67 |" | |
| } |