Upload folder using huggingface_hub
Browse files- OnClass.data-00000-of-00001 +1 -1
- OnClass.index +0 -0
- OnClass.meta +0 -0
- OnClass.npz +1 -1
- accuracies.json +2 -2
- celltypist.pkl +1 -1
- harmony_knn_classifier.joblib +2 -2
- popv_output/predictions.csv +0 -0
- preprocessing.json +15 -15
- pynndescent_index.joblib +2 -2
- scanvi/model.pt +1 -1
- scvi/model.pt +1 -1
- scvi_knn_classifier.joblib +2 -2
- svm_classifier.joblib +3 -0
- svm_classifier_cuml.joblib +1 -1
- xgboost_classifier.model +2 -2
OnClass.data-00000-of-00001
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
size 27239224
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:b849895af149d213481553a9db7d5191430cb1f98b28726ebf048a09e5328d9c
|
3 |
size 27239224
|
OnClass.index
CHANGED
Binary files a/OnClass.index and b/OnClass.index differ
|
|
OnClass.meta
CHANGED
Binary files a/OnClass.meta and b/OnClass.meta differ
|
|
OnClass.npz
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
size 144112266
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:f9bdb4dbe76c1dea578cfab10ed2f60a22b78261ba6e408f0f5affc82733fcab
|
3 |
size 144112266
|
accuracies.json
CHANGED
@@ -1,4 +1,4 @@
|
|
1 |
{
|
2 |
-
"query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| macrophage |
|
3 |
-
"ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| macrophage |
|
4 |
}
|
|
|
1 |
{
|
2 |
+
"query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| macrophage | 1630 | 0.96 | 0.97 | 0.98 | 0.98 | 0.00 | 0.95 | 0.97 | 0.95 | 0.98 |\n| pulmonary alveolar type 2 cell | 1138 | 0.97 | 0.97 | 0.98 | 0.98 | 0.00 | 0.96 | 0.98 | 0.97 | 0.98 |\n| capillary endothelial cell | 701 | 0.97 | 0.95 | 0.97 | 0.97 | 0.00 | 0.97 | 0.96 | 0.96 | 0.98 |\n| basal cell | 403 | 0.92 | 0.91 | 0.94 | 0.94 | 0.00 | 0.91 | 0.94 | 0.94 | 0.95 |\n| pulmonary alveolar type 1 cell | 301 | 0.99 | 0.98 | 0.97 | 0.98 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| intermediate monocyte | 272 | 0.64 | 0.63 | 0.69 | 0.67 | 0.00 | 0.59 | 0.78 | 0.82 | 0.78 |\n| CD4-positive, alpha-beta T cell | 213 | 0.88 | 0.89 | 0.86 | 0.83 | 0.00 | 0.89 | 0.88 | 0.88 | 0.90 |\n| CD8-positive, alpha-beta T cell | 206 | 0.85 | 0.86 | 0.81 | 0.77 | 0.00 | 0.85 | 0.84 | 0.86 | 0.88 |\n| endothelial cell of artery | 165 | 0.79 | 0.80 | 0.82 | 0.81 | 0.00 | 0.81 | 0.72 | 0.79 | 0.84 |\n| club cell | 173 | 0.79 | 0.82 | 0.86 | 0.84 | 0.00 | 0.76 | 0.85 | 0.83 | 0.87 |\n| classical monocyte | 153 | 0.57 | 0.57 | 0.63 | 0.60 | 0.00 | 0.66 | 0.71 | 0.88 | 0.77 |\n| vein endothelial cell | 143 | 0.80 | 0.80 | 0.83 | 0.84 | 0.00 | 0.82 | 0.79 | 0.85 | 0.87 |\n| basophil | 147 | 0.98 | 0.98 | 0.99 | 0.98 | 0.00 | 0.98 | 0.98 | 1.00 | 0.99 |\n| lung ciliated cell | 136 | 0.97 | 0.99 | 0.99 | 0.97 | 0.00 | 0.97 | 0.99 | 0.98 | 0.99 |\n| alveolar adventitial fibroblast | 120 | 0.84 | 0.87 | 0.83 | 0.92 | 0.00 | 0.92 | 0.90 | 0.91 | 0.92 |\n| respiratory goblet cell | 109 | 0.77 | 0.82 | 0.84 | 0.81 | 0.00 | 0.75 | 0.83 | 0.82 | 0.83 |\n| natural killer cell | 104 | 0.86 | 0.89 | 0.86 | 0.87 | 0.00 | 0.90 | 0.89 | 0.86 | 0.90 |\n| pericyte | 82 | 0.78 | 0.89 | 0.91 | 0.94 | 0.00 | 0.89 | 0.92 | 0.91 | 0.93 |\n| B cell | 69 | 0.99 | 0.99 | 0.99 | 0.96 | 0.00 | 0.97 | 0.97 | 0.97 | 0.98 |\n| adventitial cell | 59 | 0.81 | 0.82 | 0.75 | 0.89 | 0.00 | 0.82 | 0.84 | 0.87 | 0.87 |\n| non-classical monocyte | 55 | 0.34 | 0.14 | 0.36 | 0.14 | 0.00 | 0.40 | 0.51 | 0.82 | 0.53 |\n| monocyte | 50 | 0.37 | 0.20 | 0.44 | 0.31 | 0.00 | 0.42 | 0.47 | 0.72 | 0.51 |\n| neutrophil | 39 | 0.96 | 0.97 | 0.94 | 0.99 | 0.00 | 0.97 | 0.96 | 0.87 | 0.97 |\n| endothelial cell of lymphatic vessel | 28 | 0.95 | 0.98 | 0.98 | 0.97 | 0.00 | 0.93 | 0.98 | 0.97 | 0.98 |\n| bronchial smooth muscle cell | 25 | 0.00 | 0.56 | 0.64 | 0.33 | 0.00 | 0.71 | 0.69 | 0.74 | 0.69 |\n| mature NK T cell | 27 | 0.00 | 0.14 | 0.32 | 0.24 | 0.00 | 0.50 | 0.58 | 0.35 | 0.42 |\n| plasma cell | 12 | 0.71 | 0.74 | 0.87 | 0.92 | 0.00 | 0.89 | 0.92 | 0.96 | 0.92 |\n| vascular associated smooth muscle cell | 14 | 0.00 | 0.57 | 0.58 | 0.65 | 0.00 | 0.68 | 0.90 | 0.67 | 0.80 |\n| myeloid dendritic cell | 6 | 0.00 | 0.00 | 0.73 | 0.91 | 0.00 | 0.77 | 0.91 | 0.92 | 0.80 |\n| pulmonary ionocyte | 1 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |\n| plasmacytoid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.67 | 0.00 | 0.50 | 1.00 | 1.00 | 1.00 |\n| mesothelial cell | 1 | 0.00 | 0.50 | 0.50 | 0.50 | 0.00 | 0.29 | 0.33 | 0.50 | 0.50 |\n| serous cell of epithelium of bronchus | 2 | 0.00 | 0.00 | 0.00 | 0.67 | 0.00 | 0.25 | 0.80 | 0.67 | 0.00 |\n| mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
|
3 |
+
"ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| macrophage | 14856 | 0.96 | 0.98 | 0.98 | 0.98 | 0.00 | 0.95 | 0.97 | 0.95 | 0.98 |\n| pulmonary alveolar type 2 cell | 10456 | 0.97 | 0.97 | 0.99 | 0.98 | 0.00 | 0.95 | 0.98 | 0.97 | 0.98 |\n| capillary endothelial cell | 6542 | 0.97 | 0.95 | 0.98 | 0.98 | 0.00 | 0.96 | 0.96 | 0.96 | 0.98 |\n| basal cell | 3612 | 0.93 | 0.93 | 0.97 | 0.96 | 0.00 | 0.93 | 0.96 | 0.95 | 0.97 |\n| pulmonary alveolar type 1 cell | 2815 | 0.97 | 0.98 | 0.98 | 0.98 | 0.00 | 0.98 | 0.98 | 0.97 | 0.98 |\n| intermediate monocyte | 2513 | 0.64 | 0.62 | 0.78 | 0.78 | 0.00 | 0.64 | 0.82 | 0.86 | 0.84 |\n| CD4-positive, alpha-beta T cell | 1911 | 0.88 | 0.87 | 0.90 | 0.88 | 0.00 | 0.89 | 0.91 | 0.92 | 0.93 |\n| CD8-positive, alpha-beta T cell | 1692 | 0.85 | 0.83 | 0.87 | 0.84 | 0.00 | 0.86 | 0.88 | 0.90 | 0.91 |\n| endothelial cell of artery | 1589 | 0.79 | 0.80 | 0.86 | 0.84 | 0.00 | 0.81 | 0.82 | 0.83 | 0.86 |\n| club cell | 1574 | 0.83 | 0.82 | 0.92 | 0.89 | 0.00 | 0.77 | 0.88 | 0.87 | 0.91 |\n| classical monocyte | 1416 | 0.60 | 0.57 | 0.71 | 0.72 | 0.00 | 0.71 | 0.82 | 0.92 | 0.84 |\n| vein endothelial cell | 1193 | 0.82 | 0.81 | 0.88 | 0.87 | 0.00 | 0.85 | 0.86 | 0.88 | 0.88 |\n| basophil | 1175 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| lung ciliated cell | 1073 | 0.96 | 0.97 | 0.99 | 0.99 | 0.00 | 0.96 | 0.98 | 0.98 | 0.98 |\n| alveolar adventitial fibroblast | 993 | 0.87 | 0.85 | 0.89 | 0.94 | 0.00 | 0.94 | 0.97 | 0.97 | 0.96 |\n| respiratory goblet cell | 931 | 0.81 | 0.86 | 0.90 | 0.89 | 0.00 | 0.80 | 0.89 | 0.88 | 0.91 |\n| natural killer cell | 915 | 0.91 | 0.92 | 0.92 | 0.90 | 0.00 | 0.94 | 0.96 | 0.96 | 0.96 |\n| pericyte | 657 | 0.79 | 0.88 | 0.94 | 0.94 | 0.00 | 0.96 | 0.98 | 0.98 | 0.98 |\n| B cell | 594 | 0.98 | 0.97 | 0.98 | 0.99 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |\n| adventitial cell | 522 | 0.81 | 0.80 | 0.83 | 0.90 | 0.00 | 0.90 | 0.96 | 0.96 | 0.94 |\n| non-classical monocyte | 472 | 0.26 | 0.08 | 0.36 | 0.31 | 0.00 | 0.51 | 0.70 | 0.84 | 0.66 |\n| monocyte | 456 | 0.40 | 0.21 | 0.54 | 0.54 | 0.00 | 0.54 | 0.76 | 0.83 | 0.79 |\n| neutrophil | 332 | 0.96 | 0.95 | 0.97 | 0.95 | 0.00 | 0.96 | 0.98 | 0.93 | 0.98 |\n| endothelial cell of lymphatic vessel | 287 | 0.96 | 0.98 | 0.98 | 0.97 | 0.00 | 0.95 | 0.99 | 0.99 | 0.98 |\n| bronchial smooth muscle cell | 195 | 0.00 | 0.56 | 0.74 | 0.66 | 0.00 | 0.86 | 0.90 | 0.94 | 0.94 |\n| mature NK T cell | 136 | 0.00 | 0.14 | 0.50 | 0.29 | 0.00 | 0.68 | 0.79 | 0.86 | 0.88 |\n| plasma cell | 136 | 0.67 | 0.80 | 0.95 | 0.94 | 0.00 | 0.95 | 0.98 | 0.94 | 0.96 |\n| vascular associated smooth muscle cell | 117 | 0.00 | 0.47 | 0.72 | 0.66 | 0.00 | 0.82 | 0.98 | 0.98 | 0.96 |\n| myeloid dendritic cell | 27 | 0.00 | 0.06 | 0.84 | 0.83 | 0.00 | 0.44 | 0.95 | 0.93 | 0.93 |\n| pulmonary ionocyte | 24 | 0.00 | 0.78 | 0.98 | 0.84 | 0.00 | 0.83 | 0.94 | 0.96 | 0.98 |\n| plasmacytoid dendritic cell | 18 | 0.00 | 0.00 | 1.00 | 0.92 | 0.00 | 0.92 | 1.00 | 1.00 | 1.00 |\n| mesothelial cell | 17 | 0.00 | 0.83 | 0.81 | 0.79 | 0.00 | 0.42 | 0.87 | 0.92 | 0.83 |\n| serous cell of epithelium of bronchus | 13 | 0.00 | 0.27 | 0.60 | 0.53 | 0.00 | 0.55 | 0.93 | 0.96 | 0.70 |\n| mast cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.60 | 1.00 | 1.00 | 0.50 |"
|
4 |
}
|
celltypist.pkl
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
size 714121
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:87f5ff47433153d01b17a3498c303e2a226f571cdc6596679a8e615790584e3a
|
3 |
size 714121
|
harmony_knn_classifier.joblib
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
-
size
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:38af69f7243e1fbd1e418e69dd693a7e1edd829e0514d57a1e31793e0e8f2688
|
3 |
+
size 45508114
|
popv_output/predictions.csv
CHANGED
The diff for this file is too large to render.
See raw diff
|
|
preprocessing.json
CHANGED
@@ -88,7 +88,6 @@
|
|
88 |
"ENSG00000034971",
|
89 |
"ENSG00000035720",
|
90 |
"ENSG00000035862",
|
91 |
-
"ENSG00000036473",
|
92 |
"ENSG00000036530",
|
93 |
"ENSG00000036672",
|
94 |
"ENSG00000038427",
|
@@ -100,6 +99,7 @@
|
|
100 |
"ENSG00000042088",
|
101 |
"ENSG00000042429",
|
102 |
"ENSG00000042493",
|
|
|
103 |
"ENSG00000043039",
|
104 |
"ENSG00000043143",
|
105 |
"ENSG00000043591",
|
@@ -139,7 +139,6 @@
|
|
139 |
"ENSG00000058804",
|
140 |
"ENSG00000059145",
|
141 |
"ENSG00000059691",
|
142 |
-
"ENSG00000060069",
|
143 |
"ENSG00000060709",
|
144 |
"ENSG00000061337",
|
145 |
"ENSG00000061455",
|
@@ -244,7 +243,6 @@
|
|
244 |
"ENSG00000079931",
|
245 |
"ENSG00000080007",
|
246 |
"ENSG00000080031",
|
247 |
-
"ENSG00000080166",
|
248 |
"ENSG00000080572",
|
249 |
"ENSG00000080644",
|
250 |
"ENSG00000080709",
|
@@ -779,6 +777,7 @@
|
|
779 |
"ENSG00000114270",
|
780 |
"ENSG00000114279",
|
781 |
"ENSG00000114388",
|
|
|
782 |
"ENSG00000114455",
|
783 |
"ENSG00000114473",
|
784 |
"ENSG00000114547",
|
@@ -997,6 +996,7 @@
|
|
997 |
"ENSG00000124491",
|
998 |
"ENSG00000124508",
|
999 |
"ENSG00000124574",
|
|
|
1000 |
"ENSG00000124610",
|
1001 |
"ENSG00000124731",
|
1002 |
"ENSG00000124743",
|
@@ -1097,7 +1097,6 @@
|
|
1097 |
"ENSG00000129204",
|
1098 |
"ENSG00000129244",
|
1099 |
"ENSG00000129295",
|
1100 |
-
"ENSG00000129355",
|
1101 |
"ENSG00000129450",
|
1102 |
"ENSG00000129451",
|
1103 |
"ENSG00000129538",
|
@@ -1129,6 +1128,7 @@
|
|
1129 |
"ENSG00000130513",
|
1130 |
"ENSG00000130528",
|
1131 |
"ENSG00000130544",
|
|
|
1132 |
"ENSG00000130595",
|
1133 |
"ENSG00000130635",
|
1134 |
"ENSG00000130649",
|
@@ -1159,7 +1159,6 @@
|
|
1159 |
"ENSG00000131711",
|
1160 |
"ENSG00000131730",
|
1161 |
"ENSG00000131747",
|
1162 |
-
"ENSG00000131845",
|
1163 |
"ENSG00000131849",
|
1164 |
"ENSG00000131910",
|
1165 |
"ENSG00000131969",
|
@@ -1182,7 +1181,6 @@
|
|
1182 |
"ENSG00000132561",
|
1183 |
"ENSG00000132639",
|
1184 |
"ENSG00000132640",
|
1185 |
-
"ENSG00000132702",
|
1186 |
"ENSG00000132768",
|
1187 |
"ENSG00000132773",
|
1188 |
"ENSG00000132792",
|
@@ -1474,7 +1472,6 @@
|
|
1474 |
"ENSG00000140807",
|
1475 |
"ENSG00000140835",
|
1476 |
"ENSG00000140873",
|
1477 |
-
"ENSG00000140931",
|
1478 |
"ENSG00000140937",
|
1479 |
"ENSG00000140945",
|
1480 |
"ENSG00000140950",
|
@@ -1547,6 +1544,7 @@
|
|
1547 |
"ENSG00000143494",
|
1548 |
"ENSG00000143499",
|
1549 |
"ENSG00000143502",
|
|
|
1550 |
"ENSG00000143546",
|
1551 |
"ENSG00000143578",
|
1552 |
"ENSG00000143590",
|
@@ -1571,6 +1569,7 @@
|
|
1571 |
"ENSG00000144339",
|
1572 |
"ENSG00000144354",
|
1573 |
"ENSG00000144369",
|
|
|
1574 |
"ENSG00000144406",
|
1575 |
"ENSG00000144410",
|
1576 |
"ENSG00000144451",
|
@@ -2194,7 +2193,6 @@
|
|
2194 |
"ENSG00000166148",
|
2195 |
"ENSG00000166153",
|
2196 |
"ENSG00000166171",
|
2197 |
-
"ENSG00000166206",
|
2198 |
"ENSG00000166246",
|
2199 |
"ENSG00000166257",
|
2200 |
"ENSG00000166268",
|
@@ -2247,7 +2245,6 @@
|
|
2247 |
"ENSG00000167286",
|
2248 |
"ENSG00000167311",
|
2249 |
"ENSG00000167325",
|
2250 |
-
"ENSG00000167333",
|
2251 |
"ENSG00000167378",
|
2252 |
"ENSG00000167419",
|
2253 |
"ENSG00000167434",
|
@@ -2394,6 +2391,7 @@
|
|
2394 |
"ENSG00000170775",
|
2395 |
"ENSG00000170788",
|
2396 |
"ENSG00000170801",
|
|
|
2397 |
"ENSG00000170855",
|
2398 |
"ENSG00000170891",
|
2399 |
"ENSG00000170915",
|
@@ -2410,7 +2408,6 @@
|
|
2410 |
"ENSG00000171217",
|
2411 |
"ENSG00000171241",
|
2412 |
"ENSG00000171243",
|
2413 |
-
"ENSG00000171291",
|
2414 |
"ENSG00000171303",
|
2415 |
"ENSG00000171320",
|
2416 |
"ENSG00000171345",
|
@@ -2462,7 +2459,6 @@
|
|
2462 |
"ENSG00000172403",
|
2463 |
"ENSG00000172426",
|
2464 |
"ENSG00000172458",
|
2465 |
-
"ENSG00000172476",
|
2466 |
"ENSG00000172508",
|
2467 |
"ENSG00000172543",
|
2468 |
"ENSG00000172551",
|
@@ -2601,7 +2597,6 @@
|
|
2601 |
"ENSG00000177133",
|
2602 |
"ENSG00000177238",
|
2603 |
"ENSG00000177301",
|
2604 |
-
"ENSG00000177302",
|
2605 |
"ENSG00000177409",
|
2606 |
"ENSG00000177432",
|
2607 |
"ENSG00000177455",
|
@@ -2724,6 +2719,7 @@
|
|
2724 |
"ENSG00000181007",
|
2725 |
"ENSG00000181019",
|
2726 |
"ENSG00000181036",
|
|
|
2727 |
"ENSG00000181085",
|
2728 |
"ENSG00000181104",
|
2729 |
"ENSG00000181135",
|
@@ -3189,6 +3185,7 @@
|
|
3189 |
"ENSG00000198885",
|
3190 |
"ENSG00000198890",
|
3191 |
"ENSG00000198934",
|
|
|
3192 |
"ENSG00000198939",
|
3193 |
"ENSG00000198951",
|
3194 |
"ENSG00000203288",
|
@@ -3293,6 +3290,7 @@
|
|
3293 |
"ENSG00000212916",
|
3294 |
"ENSG00000212993",
|
3295 |
"ENSG00000213023",
|
|
|
3296 |
"ENSG00000213085",
|
3297 |
"ENSG00000213088",
|
3298 |
"ENSG00000213186",
|
@@ -3373,6 +3371,7 @@
|
|
3373 |
"ENSG00000224563",
|
3374 |
"ENSG00000224596",
|
3375 |
"ENSG00000224616",
|
|
|
3376 |
"ENSG00000224666",
|
3377 |
"ENSG00000224790",
|
3378 |
"ENSG00000224903",
|
@@ -3386,6 +3385,7 @@
|
|
3386 |
"ENSG00000225234",
|
3387 |
"ENSG00000225265",
|
3388 |
"ENSG00000225526",
|
|
|
3389 |
"ENSG00000225611",
|
3390 |
"ENSG00000225614",
|
3391 |
"ENSG00000225670",
|
@@ -3449,6 +3449,7 @@
|
|
3449 |
"ENSG00000230013",
|
3450 |
"ENSG00000230062",
|
3451 |
"ENSG00000230215",
|
|
|
3452 |
"ENSG00000230266",
|
3453 |
"ENSG00000230319",
|
3454 |
"ENSG00000230368",
|
@@ -3582,6 +3583,7 @@
|
|
3582 |
"ENSG00000238005",
|
3583 |
"ENSG00000238099",
|
3584 |
"ENSG00000238121",
|
|
|
3585 |
"ENSG00000239388",
|
3586 |
"ENSG00000239445",
|
3587 |
"ENSG00000239523",
|
@@ -3702,7 +3704,6 @@
|
|
3702 |
"ENSG00000250548",
|
3703 |
"ENSG00000250673",
|
3704 |
"ENSG00000250742",
|
3705 |
-
"ENSG00000250748",
|
3706 |
"ENSG00000250910",
|
3707 |
"ENSG00000251015",
|
3708 |
"ENSG00000251191",
|
@@ -3785,6 +3786,7 @@
|
|
3785 |
"ENSG00000258227",
|
3786 |
"ENSG00000258279",
|
3787 |
"ENSG00000258405",
|
|
|
3788 |
"ENSG00000258537",
|
3789 |
"ENSG00000258545",
|
3790 |
"ENSG00000258551",
|
@@ -3792,7 +3794,6 @@
|
|
3792 |
"ENSG00000258647",
|
3793 |
"ENSG00000258689",
|
3794 |
"ENSG00000258730",
|
3795 |
-
"ENSG00000258738",
|
3796 |
"ENSG00000258754",
|
3797 |
"ENSG00000258957",
|
3798 |
"ENSG00000259120",
|
@@ -3982,7 +3983,6 @@
|
|
3982 |
"ENSG00000275111",
|
3983 |
"ENSG00000275302",
|
3984 |
"ENSG00000275395",
|
3985 |
-
"ENSG00000275714",
|
3986 |
"ENSG00000276023",
|
3987 |
"ENSG00000276070",
|
3988 |
"ENSG00000276116",
|
|
|
88 |
"ENSG00000034971",
|
89 |
"ENSG00000035720",
|
90 |
"ENSG00000035862",
|
|
|
91 |
"ENSG00000036530",
|
92 |
"ENSG00000036672",
|
93 |
"ENSG00000038427",
|
|
|
99 |
"ENSG00000042088",
|
100 |
"ENSG00000042429",
|
101 |
"ENSG00000042493",
|
102 |
+
"ENSG00000042980",
|
103 |
"ENSG00000043039",
|
104 |
"ENSG00000043143",
|
105 |
"ENSG00000043591",
|
|
|
139 |
"ENSG00000058804",
|
140 |
"ENSG00000059145",
|
141 |
"ENSG00000059691",
|
|
|
142 |
"ENSG00000060709",
|
143 |
"ENSG00000061337",
|
144 |
"ENSG00000061455",
|
|
|
243 |
"ENSG00000079931",
|
244 |
"ENSG00000080007",
|
245 |
"ENSG00000080031",
|
|
|
246 |
"ENSG00000080572",
|
247 |
"ENSG00000080644",
|
248 |
"ENSG00000080709",
|
|
|
777 |
"ENSG00000114270",
|
778 |
"ENSG00000114279",
|
779 |
"ENSG00000114388",
|
780 |
+
"ENSG00000114446",
|
781 |
"ENSG00000114455",
|
782 |
"ENSG00000114473",
|
783 |
"ENSG00000114547",
|
|
|
996 |
"ENSG00000124491",
|
997 |
"ENSG00000124508",
|
998 |
"ENSG00000124574",
|
999 |
+
"ENSG00000124602",
|
1000 |
"ENSG00000124610",
|
1001 |
"ENSG00000124731",
|
1002 |
"ENSG00000124743",
|
|
|
1097 |
"ENSG00000129204",
|
1098 |
"ENSG00000129244",
|
1099 |
"ENSG00000129295",
|
|
|
1100 |
"ENSG00000129450",
|
1101 |
"ENSG00000129451",
|
1102 |
"ENSG00000129538",
|
|
|
1128 |
"ENSG00000130513",
|
1129 |
"ENSG00000130528",
|
1130 |
"ENSG00000130544",
|
1131 |
+
"ENSG00000130592",
|
1132 |
"ENSG00000130595",
|
1133 |
"ENSG00000130635",
|
1134 |
"ENSG00000130649",
|
|
|
1159 |
"ENSG00000131711",
|
1160 |
"ENSG00000131730",
|
1161 |
"ENSG00000131747",
|
|
|
1162 |
"ENSG00000131849",
|
1163 |
"ENSG00000131910",
|
1164 |
"ENSG00000131969",
|
|
|
1181 |
"ENSG00000132561",
|
1182 |
"ENSG00000132639",
|
1183 |
"ENSG00000132640",
|
|
|
1184 |
"ENSG00000132768",
|
1185 |
"ENSG00000132773",
|
1186 |
"ENSG00000132792",
|
|
|
1472 |
"ENSG00000140807",
|
1473 |
"ENSG00000140835",
|
1474 |
"ENSG00000140873",
|
|
|
1475 |
"ENSG00000140937",
|
1476 |
"ENSG00000140945",
|
1477 |
"ENSG00000140950",
|
|
|
1544 |
"ENSG00000143494",
|
1545 |
"ENSG00000143499",
|
1546 |
"ENSG00000143502",
|
1547 |
+
"ENSG00000143515",
|
1548 |
"ENSG00000143546",
|
1549 |
"ENSG00000143578",
|
1550 |
"ENSG00000143590",
|
|
|
1569 |
"ENSG00000144339",
|
1570 |
"ENSG00000144354",
|
1571 |
"ENSG00000144369",
|
1572 |
+
"ENSG00000144395",
|
1573 |
"ENSG00000144406",
|
1574 |
"ENSG00000144410",
|
1575 |
"ENSG00000144451",
|
|
|
2193 |
"ENSG00000166148",
|
2194 |
"ENSG00000166153",
|
2195 |
"ENSG00000166171",
|
|
|
2196 |
"ENSG00000166246",
|
2197 |
"ENSG00000166257",
|
2198 |
"ENSG00000166268",
|
|
|
2245 |
"ENSG00000167286",
|
2246 |
"ENSG00000167311",
|
2247 |
"ENSG00000167325",
|
|
|
2248 |
"ENSG00000167378",
|
2249 |
"ENSG00000167419",
|
2250 |
"ENSG00000167434",
|
|
|
2391 |
"ENSG00000170775",
|
2392 |
"ENSG00000170788",
|
2393 |
"ENSG00000170801",
|
2394 |
+
"ENSG00000170837",
|
2395 |
"ENSG00000170855",
|
2396 |
"ENSG00000170891",
|
2397 |
"ENSG00000170915",
|
|
|
2408 |
"ENSG00000171217",
|
2409 |
"ENSG00000171241",
|
2410 |
"ENSG00000171243",
|
|
|
2411 |
"ENSG00000171303",
|
2412 |
"ENSG00000171320",
|
2413 |
"ENSG00000171345",
|
|
|
2459 |
"ENSG00000172403",
|
2460 |
"ENSG00000172426",
|
2461 |
"ENSG00000172458",
|
|
|
2462 |
"ENSG00000172508",
|
2463 |
"ENSG00000172543",
|
2464 |
"ENSG00000172551",
|
|
|
2597 |
"ENSG00000177133",
|
2598 |
"ENSG00000177238",
|
2599 |
"ENSG00000177301",
|
|
|
2600 |
"ENSG00000177409",
|
2601 |
"ENSG00000177432",
|
2602 |
"ENSG00000177455",
|
|
|
2719 |
"ENSG00000181007",
|
2720 |
"ENSG00000181019",
|
2721 |
"ENSG00000181036",
|
2722 |
+
"ENSG00000181045",
|
2723 |
"ENSG00000181085",
|
2724 |
"ENSG00000181104",
|
2725 |
"ENSG00000181135",
|
|
|
3185 |
"ENSG00000198885",
|
3186 |
"ENSG00000198890",
|
3187 |
"ENSG00000198934",
|
3188 |
+
"ENSG00000198938",
|
3189 |
"ENSG00000198939",
|
3190 |
"ENSG00000198951",
|
3191 |
"ENSG00000203288",
|
|
|
3290 |
"ENSG00000212916",
|
3291 |
"ENSG00000212993",
|
3292 |
"ENSG00000213023",
|
3293 |
+
"ENSG00000213057",
|
3294 |
"ENSG00000213085",
|
3295 |
"ENSG00000213088",
|
3296 |
"ENSG00000213186",
|
|
|
3371 |
"ENSG00000224563",
|
3372 |
"ENSG00000224596",
|
3373 |
"ENSG00000224616",
|
3374 |
+
"ENSG00000224660",
|
3375 |
"ENSG00000224666",
|
3376 |
"ENSG00000224790",
|
3377 |
"ENSG00000224903",
|
|
|
3385 |
"ENSG00000225234",
|
3386 |
"ENSG00000225265",
|
3387 |
"ENSG00000225526",
|
3388 |
+
"ENSG00000225572",
|
3389 |
"ENSG00000225611",
|
3390 |
"ENSG00000225614",
|
3391 |
"ENSG00000225670",
|
|
|
3449 |
"ENSG00000230013",
|
3450 |
"ENSG00000230062",
|
3451 |
"ENSG00000230215",
|
3452 |
+
"ENSG00000230257",
|
3453 |
"ENSG00000230266",
|
3454 |
"ENSG00000230319",
|
3455 |
"ENSG00000230368",
|
|
|
3583 |
"ENSG00000238005",
|
3584 |
"ENSG00000238099",
|
3585 |
"ENSG00000238121",
|
3586 |
+
"ENSG00000238227",
|
3587 |
"ENSG00000239388",
|
3588 |
"ENSG00000239445",
|
3589 |
"ENSG00000239523",
|
|
|
3704 |
"ENSG00000250548",
|
3705 |
"ENSG00000250673",
|
3706 |
"ENSG00000250742",
|
|
|
3707 |
"ENSG00000250910",
|
3708 |
"ENSG00000251015",
|
3709 |
"ENSG00000251191",
|
|
|
3786 |
"ENSG00000258227",
|
3787 |
"ENSG00000258279",
|
3788 |
"ENSG00000258405",
|
3789 |
+
"ENSG00000258484",
|
3790 |
"ENSG00000258537",
|
3791 |
"ENSG00000258545",
|
3792 |
"ENSG00000258551",
|
|
|
3794 |
"ENSG00000258647",
|
3795 |
"ENSG00000258689",
|
3796 |
"ENSG00000258730",
|
|
|
3797 |
"ENSG00000258754",
|
3798 |
"ENSG00000258957",
|
3799 |
"ENSG00000259120",
|
|
|
3983 |
"ENSG00000275111",
|
3984 |
"ENSG00000275302",
|
3985 |
"ENSG00000275395",
|
|
|
3986 |
"ENSG00000276023",
|
3987 |
"ENSG00000276070",
|
3988 |
"ENSG00000276116",
|
pynndescent_index.joblib
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
-
size
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:6702de829b427f9a30c13c88b99ca30aed2e6f0632edbc41c74164b78f223100
|
3 |
+
size 48081448
|
scanvi/model.pt
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
size 11991404
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:d9e4af4bad9a156c3e1cd56b933d6c2480b109bff0515d044a7a36e82d5ea753
|
3 |
size 11991404
|
scvi/model.pt
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
size 11385341
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:d6cf4e2b92b18a2a0052272bda077d5c983797ba1709e824fd2acb06e52fab2d
|
3 |
size 11385341
|
scvi_knn_classifier.joblib
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
-
size
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:9ee4bddb7511a03c33c4fc36e0777f1e6c94910afc8a9098996998ad4256e555
|
3 |
+
size 25677218
|
svm_classifier.joblib
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:adf0e298508de47e4264fb72b4bf07fc9f89f0cd198dcb99d132deeb9febb18a
|
3 |
+
size 5453767
|
svm_classifier_cuml.joblib
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
size 581003
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:c6e30f5aaf5fa478e15495c60ecd4478e465e3b90b735492919cafaa55dd9b0d
|
3 |
size 581003
|
xgboost_classifier.model
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
-
size
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:eed5a730912d7c465f713dc320854b3d71a41c9b1cef18386b42bd0413adbc69
|
3 |
+
size 8917878
|