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@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| macrophage | 1630 | 0.96 | 0.97 | 0.98 | 0.98 | 0.00 | 0.93 | 0.96 | 0.96 | 0.98 |\n| pulmonary alveolar type 2 cell | 1145 | 0.97 | 0.97 | 0.98 | 0.98 | 0.00 | 0.96 | 0.97 | 0.97 | 0.98 |\n| capillary endothelial cell | 697 | 0.96 | 0.96 | 0.98 | 0.97 | 0.00 | 0.96 | 0.97 | 0.97 | 0.97 |\n| basal cell | 411 | 0.90 | 0.92 | 0.93 | 0.94 | 0.00 | 0.91 | 0.92 | 0.92 | 0.95 |\n| pulmonary alveolar type 1 cell | 306 | 0.97 | 0.99 | 0.98 | 0.98 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| intermediate monocyte | 274 | 0.68 | 0.64 | 0.68 | 0.69 | 0.00 | 0.58 | 0.78 | 0.85 | 0.78 |\n| CD4-positive, alpha-beta T cell | 209 | 0.88 | 0.90 | 0.86 | 0.89 | 0.00 | 0.88 | 0.86 | 0.87 | 0.92 |\n| CD8-positive, alpha-beta T cell | 205 | 0.84 | 0.87 | 0.82 | 0.87 | 0.00 | 0.87 | 0.82 | 0.85 | 0.89 |\n| endothelial cell of artery | 157 | 0.78 | 0.81 | 0.84 | 0.81 | 0.00 | 0.78 | 0.77 | 0.78 | 0.83 |\n| club cell | 179 | 0.80 | 0.81 | 0.84 | 0.84 | 0.00 | 0.77 | 0.84 | 0.83 | 0.86 |\n| classical monocyte | 151 | 0.58 | 0.56 | 0.63 | 0.56 | 0.00 | 0.60 | 0.73 | 0.88 | 0.75 |\n| vein endothelial cell | 135 | 0.81 | 0.82 | 0.85 | 0.86 | 0.00 | 0.80 | 0.80 | 0.83 | 0.87 |\n| basophil | 146 | 0.97 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.98 | 0.98 | 0.99 |\n| lung ciliated cell | 135 | 0.97 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| alveolar adventitial fibroblast | 122 | 0.83 | 0.86 | 0.84 | 0.93 | 0.00 | 0.91 | 0.91 | 0.92 | 0.93 |\n| respiratory goblet cell | 106 | 0.72 | 0.82 | 0.83 | 0.86 | 0.00 | 0.78 | 0.79 | 0.78 | 0.86 |\n| natural killer cell | 105 | 0.87 | 0.88 | 0.85 | 0.90 | 0.00 | 0.87 | 0.87 | 0.88 | 0.90 |\n| pericyte | 85 | 0.81 | 0.87 | 0.91 | 0.90 | 0.00 | 0.92 | 0.89 | 0.90 | 0.94 |\n| B cell | 66 | 0.98 | 0.98 | 0.96 | 0.97 | 0.00 | 0.95 | 0.96 | 0.97 | 0.98 |\n| adventitial cell | 61 | 0.70 | 0.82 | 0.78 | 0.88 | 0.00 | 0.84 | 0.88 | 0.87 | 0.88 |\n| non-classical monocyte | 55 | 0.26 | 0.11 | 0.33 | 0.25 | 0.00 | 0.45 | 0.56 | 0.80 | 0.43 |\n| monocyte | 50 | 0.36 | 0.14 | 0.37 | 0.40 | 0.00 | 0.34 | 0.47 | 0.78 | 0.57 |\n| neutrophil | 35 | 0.95 | 0.94 | 0.96 | 0.94 | 0.00 | 0.94 | 0.96 | 0.91 | 0.96 |\n| endothelial cell of lymphatic vessel | 34 | 0.96 | 0.96 | 0.96 | 0.92 | 0.00 | 0.94 | 0.99 | 0.97 | 0.97 |\n| bronchial smooth muscle cell | 24 | 0.00 | 0.49 | 0.65 | 0.39 | 0.00 | 0.57 | 0.68 | 0.68 | 0.68 |\n| mature NK T cell | 25 | 0.00 | 0.21 | 0.28 | 0.30 | 0.00 | 0.57 | 0.49 | 0.55 | 0.58 |\n| plasma cell | 12 | 0.87 | 0.80 | 0.92 | 0.88 | 0.00 | 0.92 | 0.92 | 0.89 | 0.89 |\n| vascular associated smooth muscle cell | 14 | 0.00 | 0.61 | 0.69 | 0.54 | 0.00 | 0.76 | 0.75 | 0.62 | 0.75 |\n| myeloid dendritic cell | 6 | 0.00 | 0.00 | 0.60 | 0.80 | 0.00 | 0.57 | 0.50 | 1.00 | 0.80 |\n| pulmonary ionocyte | 1 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.17 | 1.00 | 1.00 | 1.00 |\n| plasmacytoid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.67 | 0.00 | 0.40 | 1.00 | 1.00 | 1.00 |\n| mesothelial cell | 1 | 0.00 | 0.50 | 0.40 | 0.50 | 0.00 | 0.29 | 0.33 | 0.50 | 0.40 |\n| serous cell of epithelium of bronchus | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.05 | 0.80 | 1.00 | 0.00 |\n| mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| macrophage | 14856 | 0.96 | 0.98 | 0.98 | 0.98 | 0.00 | 0.93 | 0.96 | 0.96 | 0.98 |\n| pulmonary alveolar type 2 cell | 10449 | 0.97 | 0.97 | 0.99 | 0.98 | 0.00 | 0.95 | 0.98 | 0.97 | 0.98 |\n| capillary endothelial cell | 6546 | 0.97 | 0.95 | 0.98 | 0.97 | 0.00 | 0.96 | 0.96 | 0.96 | 0.98 |\n| basal cell | 3604 | 0.92 | 0.94 | 0.96 | 0.96 | 0.00 | 0.91 | 0.95 | 0.94 | 0.97 |\n| pulmonary alveolar type 1 cell | 2810 | 0.95 | 0.98 | 0.98 | 0.97 | 0.00 | 0.97 | 0.98 | 0.97 | 0.98 |\n| intermediate monocyte | 2511 | 0.67 | 0.61 | 0.78 | 0.79 | 0.00 | 0.66 | 0.81 | 0.86 | 0.84 |\n| CD4-positive, alpha-beta T cell | 1915 | 0.87 | 0.87 | 0.91 | 0.91 | 0.00 | 0.88 | 0.90 | 0.92 | 0.93 |\n| CD8-positive, alpha-beta T cell | 1693 | 0.84 | 0.82 | 0.89 | 0.88 | 0.00 | 0.86 | 0.87 | 0.90 | 0.91 |\n| endothelial cell of artery | 1597 | 0.79 | 0.79 | 0.86 | 0.84 | 0.00 | 0.79 | 0.81 | 0.83 | 0.86 |\n| club cell | 1568 | 0.83 | 0.82 | 0.91 | 0.89 | 0.00 | 0.75 | 0.88 | 0.86 | 0.91 |\n| classical monocyte | 1418 | 0.59 | 0.57 | 0.72 | 0.73 | 0.00 | 0.71 | 0.81 | 0.92 | 0.84 |\n| vein endothelial cell | 1201 | 0.81 | 0.81 | 0.88 | 0.86 | 0.00 | 0.83 | 0.86 | 0.89 | 0.89 |\n| basophil | 1176 | 0.98 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |\n| lung ciliated cell | 1074 | 0.96 | 0.97 | 0.99 | 0.98 | 0.00 | 0.96 | 0.99 | 0.98 | 0.98 |\n| alveolar adventitial fibroblast | 991 | 0.83 | 0.85 | 0.90 | 0.94 | 0.00 | 0.93 | 0.96 | 0.96 | 0.95 |\n| respiratory goblet cell | 934 | 0.75 | 0.86 | 0.90 | 0.89 | 0.00 | 0.78 | 0.86 | 0.87 | 0.91 |\n| natural killer cell | 914 | 0.90 | 0.92 | 0.92 | 0.93 | 0.00 | 0.93 | 0.96 | 0.96 | 0.96 |\n| pericyte | 654 | 0.79 | 0.88 | 0.94 | 0.93 | 0.00 | 0.93 | 0.97 | 0.97 | 0.97 |\n| B cell | 597 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| adventitial cell | 520 | 0.70 | 0.80 | 0.83 | 0.90 | 0.00 | 0.90 | 0.96 | 0.94 | 0.93 |\n| non-classical monocyte | 472 | 0.16 | 0.07 | 0.35 | 0.32 | 0.00 | 0.53 | 0.70 | 0.81 | 0.62 |\n| monocyte | 456 | 0.40 | 0.22 | 0.56 | 0.53 | 0.00 | 0.47 | 0.78 | 0.84 | 0.77 |\n| neutrophil | 336 | 0.94 | 0.96 | 0.97 | 0.96 | 0.00 | 0.94 | 0.99 | 0.96 | 0.99 |\n| endothelial cell of lymphatic vessel | 281 | 0.96 | 0.98 | 0.98 | 0.97 | 0.00 | 0.97 | 0.99 | 0.99 | 0.98 |\n| bronchial smooth muscle cell | 196 | 0.00 | 0.56 | 0.77 | 0.66 | 0.00 | 0.73 | 0.92 | 0.96 | 0.94 |\n| mature NK T cell | 138 | 0.00 | 0.16 | 0.50 | 0.50 | 0.00 | 0.76 | 0.81 | 0.89 | 0.91 |\n| plasma cell | 136 | 0.82 | 0.84 | 0.96 | 0.95 | 0.00 | 0.94 | 0.98 | 0.95 | 0.99 |\n| vascular associated smooth muscle cell | 117 | 0.00 | 0.53 | 0.77 | 0.66 | 0.00 | 0.86 | 0.96 | 0.97 | 0.94 |\n| myeloid dendritic cell | 27 | 0.00 | 0.07 | 0.83 | 0.72 | 0.00 | 0.64 | 0.98 | 0.90 | 0.95 |\n| pulmonary ionocyte | 24 | 0.00 | 0.84 | 0.96 | 0.81 | 0.00 | 0.59 | 0.96 | 0.92 | 0.96 |\n| plasmacytoid dendritic cell | 18 | 0.00 | 0.00 | 0.97 | 0.90 | 0.00 | 0.86 | 0.97 | 0.97 | 0.97 |\n| mesothelial cell | 17 | 0.00 | 0.81 | 0.79 | 0.85 | 0.00 | 0.45 | 0.83 | 0.83 | 0.85 |\n| serous cell of epithelium of bronchus | 13 | 0.00 | 0.14 | 0.64 | 0.47 | 0.00 | 0.07 | 0.93 | 1.00 | 0.70 |\n| mast cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.29 | 1.00 | 1.00 | 0.80 |"
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checkpoint

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