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@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| enterocyte of epithelium of large intestine | 478 | 0.83 | 0.85 | 0.84 | 0.85 | 0.00 | 0.77 | 0.82 | 0.84 | 0.84 |\n| CD4-positive, alpha-beta T cell | 405 | 0.85 | 0.88 | 0.87 | 0.73 | 0.00 | 0.80 | 0.84 | 0.87 | 0.89 |\n| plasma cell | 303 | 0.98 | 0.99 | 0.97 | 0.99 | 0.00 | 0.98 | 0.98 | 0.99 | 0.99 |\n| CD8-positive, alpha-beta T cell | 288 | 0.78 | 0.85 | 0.85 | 0.56 | 0.00 | 0.80 | 0.79 | 0.84 | 0.85 |\n| fibroblast | 252 | 0.97 | 0.98 | 0.98 | 0.96 | 0.00 | 0.97 | 0.99 | 0.98 | 0.98 |\n| B cell | 234 | 1.00 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| gamma-delta T cell | 190 | 0.90 | 0.92 | 0.93 | 0.71 | 0.00 | 0.90 | 0.90 | 0.90 | 0.92 |\n| intestinal crypt stem cell of colon | 152 | 0.83 | 0.87 | 0.83 | 0.83 | 0.00 | 0.73 | 0.82 | 0.84 | 0.89 |\n| large intestine goblet cell | 169 | 0.91 | 0.93 | 0.94 | 0.90 | 0.00 | 0.89 | 0.90 | 0.90 | 0.92 |\n| enteroglial cell | 77 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |\n| regulatory T cell | 65 | 0.71 | 0.65 | 0.68 | 0.39 | 0.00 | 0.59 | 0.71 | 0.69 | 0.77 |\n| mast cell | 51 | 0.98 | 0.98 | 0.94 | 0.99 | 0.00 | 0.98 | 0.97 | 0.97 | 0.98 |\n| myeloid leukocyte | 30 | 0.87 | 0.84 | 0.90 | 0.86 | 0.00 | 0.95 | 0.90 | 0.94 | 0.90 |\n| colon endothelial cell | 39 | 0.95 | 0.96 | 0.96 | 0.90 | 0.00 | 0.95 | 0.97 | 0.94 | 0.99 |\n| colon macrophage | 37 | 0.85 | 0.83 | 0.83 | 0.85 | 0.00 | 0.89 | 0.90 | 0.90 | 0.92 |\n| transit amplifying cell of colon | 24 | 0.74 | 0.65 | 0.70 | 0.59 | 0.00 | 0.40 | 0.63 | 0.70 | 0.77 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 25 | 0.79 | 0.71 | 0.65 | 0.29 | 0.00 | 0.64 | 0.70 | 0.73 | 0.81 |\n| paneth cell of colon | 22 | 0.60 | 0.51 | 0.65 | 0.83 | 0.00 | 0.58 | 0.65 | 0.62 | 0.82 |\n| tuft cell of colon | 16 | 1.00 | 1.00 | 0.93 | 0.90 | 0.00 | 0.94 | 1.00 | 1.00 | 1.00 |\n| myofibroblast cell | 12 | 0.80 | 0.92 | 0.96 | 0.82 | 0.00 | 0.89 | 0.96 | 0.83 | 0.92 |\n| monocyte | 3 | 0.67 | 0.80 | 0.67 | 0.67 | 0.00 | 0.80 | 0.80 | 0.80 | 0.80 |\n| mature NK T cell | 4 | 0.29 | 0.00 | 0.00 | 0.00 | 0.00 | 0.19 | 0.57 | 0.44 | 0.29 |\n| type L enteroendocrine cell | 6 | 0.71 | 0.71 | 0.92 | 0.91 | 0.00 | 0.67 | 1.00 | 0.86 | 1.00 |\n| myeloid dendritic cell | 2 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 | 0.50 | 0.50 | 0.50 | 0.67 |\n| enterochromaffin-like cell | 4 | 0.00 | 0.57 | 0.67 | 0.67 | 0.00 | 0.75 | 1.00 | 0.86 | 1.00 |\n| natural killer cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.40 | 0.50 | 0.00 | 0.00 |\n| innate lymphoid cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.29 | 0.50 | 0.00 | 0.00 |\n| neutrophil | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| enterocyte of epithelium of large intestine | 4089 | 0.84 | 0.85 | 0.87 | 0.88 | 0.00 | 0.79 | 0.84 | 0.88 | 0.87 |\n| CD4-positive, alpha-beta T cell | 3835 | 0.87 | 0.87 | 0.91 | 0.82 | 0.00 | 0.84 | 0.88 | 0.90 | 0.92 |\n| plasma cell | 3005 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| CD8-positive, alpha-beta T cell | 2674 | 0.80 | 0.84 | 0.88 | 0.75 | 0.00 | 0.82 | 0.84 | 0.87 | 0.88 |\n| fibroblast | 2345 | 0.98 | 0.98 | 0.99 | 0.98 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| B cell | 1835 | 0.99 | 0.98 | 0.99 | 0.98 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| gamma-delta T cell | 1666 | 0.90 | 0.92 | 0.95 | 0.81 | 0.00 | 0.90 | 0.93 | 0.93 | 0.95 |\n| intestinal crypt stem cell of colon | 1580 | 0.84 | 0.86 | 0.91 | 0.89 | 0.00 | 0.80 | 0.89 | 0.90 | 0.93 |\n| large intestine goblet cell | 1388 | 0.93 | 0.94 | 0.95 | 0.95 | 0.00 | 0.92 | 0.94 | 0.94 | 0.96 |\n| enteroglial cell | 771 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 0.99 |\n| regulatory T cell | 568 | 0.71 | 0.70 | 0.81 | 0.43 | 0.00 | 0.68 | 0.81 | 0.81 | 0.89 |\n| mast cell | 342 | 0.97 | 0.97 | 0.98 | 0.97 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| myeloid leukocyte | 324 | 0.86 | 0.91 | 0.94 | 0.93 | 0.00 | 0.92 | 0.99 | 1.00 | 0.96 |\n| colon endothelial cell | 309 | 0.89 | 0.88 | 0.93 | 0.94 | 0.00 | 0.95 | 0.97 | 0.96 | 0.96 |\n| colon macrophage | 291 | 0.80 | 0.85 | 0.87 | 0.87 | 0.00 | 0.93 | 0.99 | 1.00 | 0.94 |\n| transit amplifying cell of colon | 213 | 0.76 | 0.69 | 0.78 | 0.65 | 0.00 | 0.49 | 0.77 | 0.74 | 0.84 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 203 | 0.69 | 0.69 | 0.78 | 0.36 | 0.00 | 0.69 | 0.83 | 0.82 | 0.83 |\n| paneth cell of colon | 195 | 0.60 | 0.33 | 0.82 | 0.79 | 0.00 | 0.61 | 0.81 | 0.65 | 0.91 |\n| tuft cell of colon | 162 | 0.92 | 0.95 | 0.95 | 0.93 | 0.00 | 0.89 | 0.97 | 0.96 | 0.97 |\n| myofibroblast cell | 70 | 0.82 | 0.80 | 0.88 | 0.88 | 0.00 | 0.93 | 1.00 | 1.00 | 0.94 |\n| monocyte | 63 | 0.71 | 0.80 | 0.76 | 0.79 | 0.00 | 0.93 | 0.98 | 0.98 | 0.92 |\n| mature NK T cell | 43 | 0.59 | 0.55 | 0.75 | 0.39 | 0.00 | 0.45 | 0.96 | 0.97 | 0.93 |\n| type L enteroendocrine cell | 38 | 0.75 | 0.74 | 0.92 | 0.79 | 0.00 | 0.76 | 0.99 | 0.95 | 1.00 |\n| myeloid dendritic cell | 38 | 0.00 | 0.17 | 0.47 | 0.33 | 0.00 | 0.80 | 1.00 | 1.00 | 0.62 |\n| enterochromaffin-like cell | 23 | 0.00 | 0.68 | 0.88 | 0.77 | 0.00 | 0.72 | 0.98 | 0.98 | 0.96 |\n| natural killer cell | 13 | 0.00 | 0.00 | 0.27 | 0.00 | 0.00 | 0.65 | 0.96 | 1.00 | 0.92 |\n| innate lymphoid cell | 11 | 0.00 | 0.00 | 0.43 | 0.15 | 0.00 | 0.46 | 0.96 | 0.96 | 0.86 |\n| neutrophil | 9 | 0.60 | 0.36 | 0.36 | 0.75 | 0.00 | 0.90 | 1.00 | 0.95 | 1.00 |"
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celltypist.pkl

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checkpoint

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harmony_knn_classifier.joblib

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obo_dag.joblib

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pynndescent_index.joblib

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scanvi/model.pt

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