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README.md

@@ -32,17 +32,17 @@ computed on a 10% random subset of the data that was not used for training.
 
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| kidney epithelial cell | 927 | 1.00 | 0.99 | 1.00 | 0.99 | 0.00 | 0.98 | 1.00 | 0.99 | 1.00 |
-| CD8-positive, alpha-beta T cell | 50 | 0.85 | 0.88 | 0.92 | 0.49 | 0.00 | 0.88 | 0.88 | 0.92 | 0.94 |
-| B cell | 46 | 0.97 | 0.84 | 0.95 | 0.65 | 0.00 | 0.94 | 0.94 | 0.96 | 0.94 |
-| macrophage | 39 | 0.80 | 0.73 | 0.85 | 0.64 | 0.00 | 0.75 | 0.77 | 0.77 | 0.79 |
-| CD4-positive, alpha-beta T cell | 25 | 0.80 | 0.89 | 0.85 | 0.26 | 0.00 | 0.85 | 0.78 | 0.83 | 0.91 |
-| natural killer cell | 23 | 0.93 | 0.94 | 0.96 | 0.41 | 0.00 | 0.94 | 0.96 | 0.98 | 0.96 |
-| endothelial cell | 14 | 0.90 | 0.67 | 0.96 | 0.62 | 0.00 | 0.56 | 0.86 | 0.83 | 0.92 |
-| monocyte | 7 | 0.00 | 0.00 | 0.55 | 0.15 | 0.00 | 0.62 | 0.62 | 0.36 | 0.25 |
-| non-classical monocyte | 2 | 0.00 | 0.00 | 0.50 | 0.00 | 0.00 | 0.57 | 0.50 | 0.00 | 0.00 |
-| neutrophil | 2 | 1.00 | 0.00 | 1.00 | 0.00 | 0.00 | 1.00 | 0.67 | 1.00 | 1.00 |
-| T cell | 3 | 0.00 | 0.00 | 0.50 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
+| kidney epithelial cell | 918 | 1.00 | 0.99 | 1.00 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 1.00 |
+| CD8-positive, alpha-beta T cell | 55 | 0.79 | 0.85 | 0.91 | 0.57 | 0.00 | 0.86 | 0.92 | 0.91 | 0.94 |
+| B cell | 49 | 0.97 | 0.89 | 0.94 | 0.86 | 0.00 | 0.97 | 0.94 | 0.95 | 0.95 |
+| macrophage | 38 | 0.85 | 0.82 | 0.79 | 0.80 | 0.00 | 0.80 | 0.78 | 0.79 | 0.82 |
+| CD4-positive, alpha-beta T cell | 30 | 0.60 | 0.89 | 0.81 | 0.51 | 0.00 | 0.79 | 0.87 | 0.85 | 0.88 |
+| natural killer cell | 25 | 0.84 | 0.92 | 0.94 | 0.45 | 0.00 | 0.94 | 0.94 | 0.96 | 0.94 |
+| endothelial cell | 12 | 0.89 | 0.59 | 0.96 | 0.67 | 0.00 | 0.56 | 0.73 | 0.69 | 0.92 |
+| monocyte | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.36 | 0.57 | 0.00 | 0.00 |
+| non-classical monocyte | 2 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 | 0.00 | 0.40 | 0.50 | 0.00 |
+| neutrophil | 2 | 1.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.80 | 0.67 | 1.00 | 1.00 |
+| T cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 | plasma cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 | intermediate monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 
@@ -50,19 +50,19 @@ The train accuracies are computed on the training data.
 
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| kidney epithelial cell | 8351 | 1.00 | 0.99 | 1.00 | 1.00 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |
-| CD8-positive, alpha-beta T cell | 487 | 0.85 | 0.80 | 0.90 | 0.67 | 0.00 | 0.94 | 1.00 | 1.00 | 0.97 |
-| B cell | 448 | 0.98 | 0.78 | 0.99 | 0.78 | 0.00 | 0.97 | 1.00 | 1.00 | 0.99 |
-| macrophage | 300 | 0.81 | 0.55 | 0.87 | 0.75 | 0.00 | 0.87 | 0.98 | 0.96 | 0.95 |
-| CD4-positive, alpha-beta T cell | 274 | 0.82 | 0.79 | 0.88 | 0.53 | 0.00 | 0.93 | 1.00 | 1.00 | 0.95 |
-| natural killer cell | 178 | 0.92 | 0.92 | 0.94 | 0.56 | 0.00 | 0.96 | 1.00 | 1.00 | 0.98 |
-| endothelial cell | 87 | 0.92 | 0.00 | 0.97 | 0.68 | 0.00 | 0.49 | 0.91 | 0.91 | 0.98 |
-| monocyte | 47 | 0.00 | 0.00 | 0.52 | 0.43 | 0.00 | 0.93 | 1.00 | 1.00 | 0.88 |
-| non-classical monocyte | 25 | 0.00 | 0.00 | 0.78 | 0.32 | 0.00 | 0.85 | 1.00 | 1.00 | 0.89 |
-| neutrophil | 20 | 1.00 | 0.00 | 0.95 | 0.10 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
-| T cell | 14 | 0.00 | 0.00 | 0.25 | 0.00 | 0.00 | 0.74 | 1.00 | 1.00 | 0.92 |
-| plasma cell | 5 | 0.00 | 0.00 | 0.75 | 0.00 | 0.00 | 0.91 | 1.00 | 1.00 | 1.00 |
-| intermediate monocyte | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 0.67 |
+| kidney epithelial cell | 8360 | 0.99 | 0.99 | 1.00 | 1.00 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |
+| CD8-positive, alpha-beta T cell | 482 | 0.82 | 0.80 | 0.90 | 0.72 | 0.00 | 0.93 | 1.00 | 1.00 | 0.97 |
+| B cell | 445 | 0.98 | 0.82 | 0.99 | 0.91 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |
+| macrophage | 301 | 0.79 | 0.60 | 0.87 | 0.77 | 0.00 | 0.89 | 0.99 | 0.95 | 0.94 |
+| CD4-positive, alpha-beta T cell | 269 | 0.73 | 0.81 | 0.86 | 0.65 | 0.00 | 0.92 | 1.00 | 1.00 | 0.95 |
+| natural killer cell | 176 | 0.89 | 0.91 | 0.94 | 0.65 | 0.00 | 0.94 | 1.00 | 1.00 | 0.98 |
+| endothelial cell | 89 | 0.72 | 0.00 | 0.97 | 0.75 | 0.00 | 0.57 | 0.71 | 0.71 | 0.87 |
+| monocyte | 50 | 0.00 | 0.00 | 0.63 | 0.21 | 0.00 | 0.88 | 1.00 | 1.00 | 0.82 |
+| non-classical monocyte | 25 | 0.00 | 0.00 | 0.62 | 0.18 | 0.00 | 0.88 | 1.00 | 1.00 | 0.75 |
+| neutrophil | 20 | 1.00 | 0.00 | 0.95 | 0.17 | 0.00 | 0.89 | 1.00 | 1.00 | 1.00 |
+| T cell | 14 | 0.00 | 0.00 | 0.24 | 0.00 | 0.00 | 0.78 | 1.00 | 1.00 | 0.96 |
+| plasma cell | 5 | 0.00 | 0.00 | 0.75 | 0.00 | 0.00 | 0.77 | 1.00 | 1.00 | 1.00 |
+| intermediate monocyte | 2 | 0.00 | 0.00 | 0.40 | 0.00 | 0.00 | 0.33 | 1.00 | 1.00 | 0.67 |
 
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