{ "dataset_name": "Dataset601_VertebralBodies", "plans_name": "nnUNetResEncUNetLPlans", "original_median_spacing_after_transp": [ 1.5, 1.5, 1.5 ], "original_median_shape_after_transp": [ 239, 252, 252 ], "image_reader_writer": "SimpleITKIO", "transpose_forward": [ 0, 1, 2 ], "transpose_backward": [ 0, 1, 2 ], "configurations": { "2d": { "data_identifier": "nnUNetPlans_2d", "preprocessor_name": "DefaultPreprocessor", "batch_size": 136, "patch_size": [ 256, 256 ], "median_image_size_in_voxels": [ 240.0, 240.0 ], "spacing": [ 1.5, 1.5 ], "normalization_schemes": [ "CTNormalization" ], "use_mask_for_norm": [ false ], "resampling_fn_data": "resample_data_or_seg_to_shape", "resampling_fn_seg": "resample_data_or_seg_to_shape", "resampling_fn_data_kwargs": { "is_seg": false, "order": 3, "order_z": 0, "force_separate_z": null }, "resampling_fn_seg_kwargs": { "is_seg": true, "order": 1, "order_z": 0, "force_separate_z": null }, "resampling_fn_probabilities": "resample_data_or_seg_to_shape", "resampling_fn_probabilities_kwargs": { "is_seg": false, "order": 1, "order_z": 0, "force_separate_z": null }, "architecture": { "network_class_name": "dynamic_network_architectures.architectures.unet.ResidualEncoderUNet", "arch_kwargs": { "n_stages": 7, "features_per_stage": [ 32, 64, 128, 256, 512, 512, 512 ], "conv_op": "torch.nn.modules.conv.Conv2d", "kernel_sizes": [ [ 3, 3 ], [ 3, 3 ], [ 3, 3 ], [ 3, 3 ], [ 3, 3 ], [ 3, 3 ], [ 3, 3 ] ], "strides": [ [ 1, 1 ], [ 2, 2 ], [ 2, 2 ], [ 2, 2 ], [ 2, 2 ], [ 2, 2 ], [ 2, 2 ] ], "n_blocks_per_stage": [ 1, 3, 4, 6, 6, 6, 6 ], "n_conv_per_stage_decoder": [ 1, 1, 1, 1, 1, 1 ], "conv_bias": true, "norm_op": "torch.nn.modules.instancenorm.InstanceNorm2d", "norm_op_kwargs": { "eps": 1e-05, "affine": true }, "dropout_op": null, "dropout_op_kwargs": null, "nonlin": "torch.nn.LeakyReLU", "nonlin_kwargs": { "inplace": true } }, "_kw_requires_import": [ "conv_op", "norm_op", "dropout_op", "nonlin" ] }, "batch_dice": true }, "3d_fullres": { "data_identifier": "nnUNetPlans_3d_fullres", "preprocessor_name": "DefaultPreprocessor", "batch_size": 2, "patch_size": [ 192, 192, 192 ], "median_image_size_in_voxels": [ 235.0, 240.0, 240.0 ], "spacing": [ 1.5, 1.5, 1.5 ], "normalization_schemes": [ "CTNormalization" ], "use_mask_for_norm": [ false ], "resampling_fn_data": "resample_data_or_seg_to_shape", "resampling_fn_seg": "resample_data_or_seg_to_shape", "resampling_fn_data_kwargs": { "is_seg": false, "order": 3, "order_z": 0, "force_separate_z": null }, "resampling_fn_seg_kwargs": { "is_seg": true, "order": 1, "order_z": 0, "force_separate_z": null }, "resampling_fn_probabilities": "resample_data_or_seg_to_shape", "resampling_fn_probabilities_kwargs": { "is_seg": false, "order": 1, "order_z": 0, "force_separate_z": null }, "architecture": { "network_class_name": "dynamic_network_architectures.architectures.unet.ResidualEncoderUNet", "arch_kwargs": { "n_stages": 6, "features_per_stage": [ 32, 64, 128, 256, 320, 320 ], "conv_op": "torch.nn.modules.conv.Conv3d", "kernel_sizes": [ [ 3, 3, 3 ], [ 3, 3, 3 ], [ 3, 3, 3 ], [ 3, 3, 3 ], [ 3, 3, 3 ], [ 3, 3, 3 ] ], "strides": [ [ 1, 1, 1 ], [ 2, 2, 2 ], [ 2, 2, 2 ], [ 2, 2, 2 ], [ 2, 2, 2 ], [ 2, 2, 2 ] ], "n_blocks_per_stage": [ 1, 3, 4, 6, 6, 6 ], "n_conv_per_stage_decoder": [ 1, 1, 1, 1, 1 ], "conv_bias": true, "norm_op": "torch.nn.modules.instancenorm.InstanceNorm3d", "norm_op_kwargs": { "eps": 1e-05, "affine": true }, "dropout_op": null, "dropout_op_kwargs": null, "nonlin": "torch.nn.LeakyReLU", "nonlin_kwargs": { "inplace": true } }, "_kw_requires_import": [ "conv_op", "norm_op", "dropout_op", "nonlin" ] }, "batch_dice": false } }, "experiment_planner_used": "nnUNetPlannerResEncL", "label_manager": "LabelManager", "foreground_intensity_properties_per_channel": { "0": { "max": 10076.0, "mean": 251.18613451837237, "median": 216.0, "min": -2048.0, "percentile_00_5": -158.0, "percentile_99_5": 1100.0, "std": 205.1041738973246 } } }