Update README.md
Browse files
README.md
CHANGED
@@ -1,5 +1,110 @@
|
|
1 |
---
|
2 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
3 |
---
|
4 |
|
5 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
---
|
2 |
+
annotations_creators:
|
3 |
+
- machine-generated
|
4 |
+
language_creators:
|
5 |
+
- machine-generated
|
6 |
+
license:
|
7 |
+
- mit
|
8 |
+
multilinguality:
|
9 |
+
- monolingual
|
10 |
+
pretty_name: bace_regression
|
11 |
+
size_categories:
|
12 |
+
- 1K<n<10K
|
13 |
+
source_datasets: []
|
14 |
+
tags:
|
15 |
+
- bio
|
16 |
+
- bio-chem
|
17 |
+
- molnet
|
18 |
+
- molecule-net
|
19 |
+
- biophysics
|
20 |
+
task_categories:
|
21 |
+
- other
|
22 |
+
task_ids: []
|
23 |
---
|
24 |
|
25 |
+
# Dataset Card for bace_regression
|
26 |
+
|
27 |
+
## Table of Contents
|
28 |
+
- [Table of Contents](#table-of-contents)
|
29 |
+
- [Dataset Description](#dataset-description)
|
30 |
+
- [Dataset Summary](#dataset-summary)
|
31 |
+
- [Supported Tasks and Leaderboards](#supported-tasks-and-leaderboards)
|
32 |
+
- [Languages](#languages)
|
33 |
+
- [Dataset Structure](#dataset-structure)
|
34 |
+
- [Data Instances](#data-instances)
|
35 |
+
- [Data Fields](#data-fields)
|
36 |
+
- [Data Splits](#data-splits)
|
37 |
+
- [Dataset Creation](#dataset-creation)
|
38 |
+
- [Curation Rationale](#curation-rationale)
|
39 |
+
- [Source Data](#source-data)
|
40 |
+
- [Annotations](#annotations)
|
41 |
+
- [Personal and Sensitive Information](#personal-and-sensitive-information)
|
42 |
+
- [Considerations for Using the Data](#considerations-for-using-the-data)
|
43 |
+
- [Social Impact of Dataset](#social-impact-of-dataset)
|
44 |
+
- [Discussion of Biases](#discussion-of-biases)
|
45 |
+
- [Other Known Limitations](#other-known-limitations)
|
46 |
+
- [Additional Information](#additional-information)
|
47 |
+
- [Dataset Curators](#dataset-curators)
|
48 |
+
- [Licensing Information](#licensing-information)
|
49 |
+
- [Citation Information](#citation-information)
|
50 |
+
- [Contributions](#contributions)
|
51 |
+
|
52 |
+
## Dataset Description
|
53 |
+
|
54 |
+
- **Homepage: https://moleculenet.org/**
|
55 |
+
- **Repository: https://github.com/deepchem/deepchem/tree/master**
|
56 |
+
- **Paper: https://arxiv.org/abs/1703.00564**
|
57 |
+
|
58 |
+
### Dataset Summary
|
59 |
+
|
60 |
+
`bace_regression` is a dataset included in [MoleculeNet](https://moleculenet.org/). This dataset consists of Quantitative (IC50) binding results for a set of inhibitors of human β-secretase 1(BACE-1).
|
61 |
+
|
62 |
+
## Dataset Structure
|
63 |
+
|
64 |
+
### Data Fields
|
65 |
+
|
66 |
+
Each split contains
|
67 |
+
|
68 |
+
* `smiles`: the [SMILES](https://en.wikipedia.org/wiki/Simplified_molecular-input_line-entry_system) representation of a molecule
|
69 |
+
* `selfies`: the [SELFIES](https://github.com/aspuru-guzik-group/selfies) representation of a molecule
|
70 |
+
* `target`: the `IC50` binding results
|
71 |
+
|
72 |
+
### Data Splits
|
73 |
+
|
74 |
+
The dataset is split into an 80/10/10 train/valid/test split using scaffold split.
|
75 |
+
|
76 |
+
### Source Data
|
77 |
+
|
78 |
+
#### Initial Data Collection and Normalization
|
79 |
+
|
80 |
+
Data was originially generated by the Pande Group at Standford
|
81 |
+
|
82 |
+
### Licensing Information
|
83 |
+
|
84 |
+
This dataset was originally released under an MIT license
|
85 |
+
|
86 |
+
### Citation Information
|
87 |
+
|
88 |
+
```
|
89 |
+
@misc{https://doi.org/10.48550/arxiv.1703.00564,
|
90 |
+
doi = {10.48550/ARXIV.1703.00564},
|
91 |
+
|
92 |
+
url = {https://arxiv.org/abs/1703.00564},
|
93 |
+
|
94 |
+
author = {Wu, Zhenqin and Ramsundar, Bharath and Feinberg, Evan N. and Gomes, Joseph and Geniesse, Caleb and Pappu, Aneesh S. and Leswing, Karl and Pande, Vijay},
|
95 |
+
|
96 |
+
keywords = {Machine Learning (cs.LG), Chemical Physics (physics.chem-ph), Machine Learning (stat.ML), FOS: Computer and information sciences, FOS: Computer and information sciences, FOS: Physical sciences, FOS: Physical sciences},
|
97 |
+
|
98 |
+
title = {MoleculeNet: A Benchmark for Molecular Machine Learning},
|
99 |
+
|
100 |
+
publisher = {arXiv},
|
101 |
+
|
102 |
+
year = {2017},
|
103 |
+
|
104 |
+
copyright = {arXiv.org perpetual, non-exclusive license}
|
105 |
+
}
|
106 |
+
```
|
107 |
+
|
108 |
+
### Contributions
|
109 |
+
|
110 |
+
Thanks to [@zanussbaum](https://github.com/zanussbaum) for adding this dataset.
|