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README.md
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1 |
+
---
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2 |
+
dataset_info:
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3 |
+
features:
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4 |
+
- name: '#genome'
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5 |
+
dtype: string
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6 |
+
- name: asm_name
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7 |
+
dtype: string
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8 |
+
- name: assembly_accession
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9 |
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dtype: string
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10 |
+
- name: bioproject
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11 |
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dtype: string
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12 |
+
- name: biosample
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13 |
+
dtype: string
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14 |
+
- name: wgs_master
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15 |
+
dtype: float64
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16 |
+
- name: seq_rel_date
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17 |
+
dtype: string
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18 |
+
- name: submitter
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19 |
+
dtype: string
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20 |
+
- name: ftp_path
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21 |
+
dtype: string
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22 |
+
- name: img_id
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23 |
+
dtype: float64
|
24 |
+
- name: gtdb_id
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25 |
+
dtype: string
|
26 |
+
- name: scope
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27 |
+
dtype: string
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28 |
+
- name: assembly_level
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29 |
+
dtype: string
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30 |
+
- name: genome_rep
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31 |
+
dtype: string
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32 |
+
- name: refseq_category
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33 |
+
dtype: string
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34 |
+
- name: release_type
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35 |
+
dtype: string
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36 |
+
- name: taxid
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37 |
+
dtype: float64
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38 |
+
- name: species_taxid
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39 |
+
dtype: float64
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40 |
+
- name: organism_name
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41 |
+
dtype: string
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42 |
+
- name: infraspecific_name
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43 |
+
dtype: string
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44 |
+
- name: isolate
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45 |
+
dtype: string
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46 |
+
- name: superkingdom
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47 |
+
dtype: string
|
48 |
+
- name: phylum
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49 |
+
dtype: string
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50 |
+
- name: class
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51 |
+
dtype: string
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52 |
+
- name: order
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53 |
+
dtype: string
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54 |
+
- name: family
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55 |
+
dtype: string
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56 |
+
- name: genus
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57 |
+
dtype: string
|
58 |
+
- name: species
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59 |
+
dtype: string
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60 |
+
- name: classified
|
61 |
+
dtype: bool
|
62 |
+
- name: lv1_group
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63 |
+
dtype: string
|
64 |
+
- name: lv2_group
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65 |
+
dtype: string
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66 |
+
- name: score_faa
|
67 |
+
dtype: float64
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68 |
+
- name: score_fna
|
69 |
+
dtype: float64
|
70 |
+
- name: score_rrna
|
71 |
+
dtype: float64
|
72 |
+
- name: score_trna
|
73 |
+
dtype: float64
|
74 |
+
- name: total_length
|
75 |
+
dtype: float64
|
76 |
+
- name: contigs
|
77 |
+
dtype: float64
|
78 |
+
- name: gc
|
79 |
+
dtype: float64
|
80 |
+
- name: n50
|
81 |
+
dtype: float64
|
82 |
+
- name: l50
|
83 |
+
dtype: float64
|
84 |
+
- name: proteins
|
85 |
+
dtype: float64
|
86 |
+
- name: protein_length
|
87 |
+
dtype: float64
|
88 |
+
- name: coding_density
|
89 |
+
dtype: float64
|
90 |
+
- name: completeness
|
91 |
+
dtype: float64
|
92 |
+
- name: contamination
|
93 |
+
dtype: float64
|
94 |
+
- name: strain_heterogeneity
|
95 |
+
dtype: float64
|
96 |
+
- name: markers
|
97 |
+
dtype: float64
|
98 |
+
- name: 5s_rrna
|
99 |
+
dtype: string
|
100 |
+
- name: 16s_rrna
|
101 |
+
dtype: string
|
102 |
+
- name: 23s_rrna
|
103 |
+
dtype: string
|
104 |
+
- name: trnas
|
105 |
+
dtype: float64
|
106 |
+
- name: draft_quality
|
107 |
+
dtype: string
|
108 |
+
- name: start_position
|
109 |
+
dtype: int64
|
110 |
+
- name: human_label
|
111 |
+
dtype: int64
|
112 |
+
- name: autotrain_text
|
113 |
+
dtype: string
|
114 |
+
- name: autotrain_label
|
115 |
+
dtype:
|
116 |
+
class_label:
|
117 |
+
names:
|
118 |
+
'0': Acetobacter pasteurianus IFO 3283-01 IFO 3283 substr. IFO 3283-01
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119 |
+
'1': Alcanivorax borkumensis SK2
|
120 |
+
'2': Aquifex aeolicus VF5
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121 |
+
'3': Archaeoglobus fulgidus DSM 4304
|
122 |
+
'4': Azorhizobium caulinodans ORS 571
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123 |
+
'5': Bacillus anthracis str. Ames
|
124 |
+
'6': Bacillus anthracis str. Sterne ASM816v1
|
125 |
+
'7': Bacillus cereus ATCC 14579
|
126 |
+
'8': Bacillus clausii KSM-K16
|
127 |
+
'9': Bacillus pseudofirmus OF4
|
128 |
+
'10': Bacteroides fragilis YCH46
|
129 |
+
'11': Bacteroides thetaiotaomicron VPI-5482
|
130 |
+
'12': Bifidobacterium adolescentis ATCC 15703
|
131 |
+
'13': Bifidobacterium longum NCC2705
|
132 |
+
'14': Borrelia burgdorferi B31
|
133 |
+
'15': Brevibacillus brevis NBRC 100599
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134 |
+
'16': Buchnera aphidicola str. Bp (Baizongia pistaciae)
|
135 |
+
'17': Buchnera aphidicola str. Sg (Schizaphis graminum) Sg
|
136 |
+
'18': Caldanaerobacter subterraneus subsp. tengcongensis MB4
|
137 |
+
'19': Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
|
138 |
+
'20': Candidatus Vesicomyosocius okutanii HA
|
139 |
+
'21': Chlamydia felis Fe/C-56
|
140 |
+
'22': Chlamydia trachomatis D/UW-3/CX
|
141 |
+
'23': Chlamydophila caviae GPIC
|
142 |
+
'24': Chlamydophila pneumoniae CWL029
|
143 |
+
'25': Chlamydophila pneumoniae TW-183
|
144 |
+
'26': Chlorobium tepidum TLS
|
145 |
+
'27': Chromobacterium violaceum ATCC 12472
|
146 |
+
'28': Clostridioides difficile 630 ASM920v1
|
147 |
+
'29': Clostridium acetobutylicum ATCC 824
|
148 |
+
'30': Clostridium tetani E88 Massachusetts substr. E88
|
149 |
+
'31': Corynebacterium jeikeium K411 K411 = NCTC 11915
|
150 |
+
'32': Coxiella burnetii RSA 493 ASM776v1
|
151 |
+
'33': Deferribacter desulfuricans SSM1
|
152 |
+
'34': Dehalococcoides mccartyi CBDB1
|
153 |
+
'35': Deinococcus radiodurans R1 ASM856v1
|
154 |
+
'36': Desulfovibrio magneticus RS-1
|
155 |
+
'37': Enterococcus faecalis V583 ASM778v1
|
156 |
+
'38': Escherichia coli O157:H7 str. Sakai Sakai substr. RIMD 0509952
|
157 |
+
'39': Finegoldia magna ATCC 29328
|
158 |
+
'40': Francisella tularensis subsp. holarctica LVS ASM924v1
|
159 |
+
'41': Fusobacterium nucleatum subsp. nucleatum ATCC 25586
|
160 |
+
'42': Gemmatimonas aurantiaca T-27
|
161 |
+
'43': Geobacter sulfurreducens PCA
|
162 |
+
'44': Haemophilus ducreyi 35000HP
|
163 |
+
'45': Haloquadratum walsbyi DSM 16790 DSM 16790 = HBSQ001
|
164 |
+
'46': Helicobacter acinonychis str. Sheeba
|
165 |
+
'47': Helicobacter hepaticus ATCC 51449
|
166 |
+
'48': Helicobacter pylori 26695 ASM852v1
|
167 |
+
'49': Hydrogenobacter thermophilus TK-6 ASM1078v1
|
168 |
+
'50': Idiomarina loihiensis L2TR
|
169 |
+
'51': Kocuria rhizophila DC2201
|
170 |
+
'52': Lactobacillus fermentum IFO 3956
|
171 |
+
'53': Lactobacillus salivarius UCC118
|
172 |
+
'54': Lactococcus lactis subsp. lactis Il1403 IL1403
|
173 |
+
'55': Macrococcus caseolyticus JCSC5402
|
174 |
+
'56': Magnetospirillum magneticum AMB-1
|
175 |
+
'57': Mannheimia succiniciproducens MBEL55E
|
176 |
+
'58': Methanocella paludicola SANAE
|
177 |
+
'59': Methanococcus voltae A3
|
178 |
+
'60': Methanopyrus kandleri AV19
|
179 |
+
'61': Methanosarcina acetivorans C2A
|
180 |
+
'62': Methanothermobacter thermautotrophicus str. Delta H
|
181 |
+
'63': Methylococcus capsulatus str. Bath
|
182 |
+
'64': Microcystis aeruginosa NIES-843
|
183 |
+
'65': Mycobacterium avium subsp. paratuberculosis K-10
|
184 |
+
'66': Neisseria gonorrhoeae FA 1090
|
185 |
+
'67': Neisseria meningitidis MC58
|
186 |
+
'68': Nitratiruptor sp. SB155-2 ASM1032v1
|
187 |
+
'69': Nitrosomonas europaea ATCC 19718
|
188 |
+
'70': Nostoc sp. PCC 7120 ASM970v1
|
189 |
+
'71': Onion yellows phytoplasma OY-M onion yellows
|
190 |
+
'72': Orientia tsutsugamushi str. Ikeda
|
191 |
+
'73': Pelotomaculum thermopropionicum SI
|
192 |
+
'74': Picrophilus torridus DSM 9790
|
193 |
+
'75': Porphyromonas gingivalis ATCC 33277
|
194 |
+
'76': Prochlorococcus marinus subsp. marinus str. CCMP1375
|
195 |
+
'77': Propionibacterium acnes KPA171202
|
196 |
+
'78': Pseudomonas putida KT2440
|
197 |
+
'79': Pyrobaculum aerophilum str. IM2
|
198 |
+
'80': Pyrococcus furiosus DSM 3638
|
199 |
+
'81': Ralstonia solanacearum GMI1000
|
200 |
+
'82': Rickettsia conorii str. Malish 7
|
201 |
+
'83': Rickettsia typhi str. Wilmington
|
202 |
+
'84': Rothia mucilaginosa DY-18
|
203 |
+
'85': Shigella flexneri 2a str. 301
|
204 |
+
'86': Sinorhizobium meliloti 1021
|
205 |
+
'87': Sodalis glossinidius str. 'morsitans' morsitans
|
206 |
+
'88': Staphylococcus epidermidis ATCC 12228 ASM764v1
|
207 |
+
'89': Staphylococcus haemolyticus JCSC1435
|
208 |
+
'90': Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 ASM1012v1
|
209 |
+
'91': Streptococcus agalactiae 2603V/R
|
210 |
+
'92': Streptococcus mutans UA159
|
211 |
+
'93': Streptococcus pyogenes M1 GAS SF370
|
212 |
+
'94': Streptococcus uberis 0140J
|
213 |
+
'95': Streptomyces avermitilis MA-4680 = NBRC 14893 MA-4680 ASM976v2
|
214 |
+
'96': Streptomyces griseus subsp. griseus NBRC 13350
|
215 |
+
'97': Sulfolobus solfataricus P2
|
216 |
+
'98': Sulfurovum sp. NBC37-1 ASM1034v1
|
217 |
+
'99': Symbiobacterium thermophilum IAM 14863 IAM14863
|
218 |
+
'100': Synechococcus elongatus PCC 6301
|
219 |
+
'101': Synechocystis sp. PCC 6803 ASM972v1
|
220 |
+
'102': Thermococcus kodakarensis KOD1
|
221 |
+
'103': Thermotoga maritima MSB8 ASM854v1
|
222 |
+
'104': Treponema denticola ATCC 35405
|
223 |
+
'105': Treponema pallidum subsp. pallidum str. Nichols ASM860v1
|
224 |
+
'106': Tropheryma whipplei str. Twist
|
225 |
+
'107': Vibrio cholerae O1 biovar El Tor str. N16961
|
226 |
+
'108': Vibrio vulnificus YJ016
|
227 |
+
'109': Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
|
228 |
+
'110': Wolbachia endosymbiont of Drosophila melanogaster wMel
|
229 |
+
'111': Wolbachia endosymbiont strain TRS of Brugia malayi
|
230 |
+
'112': Xanthomonas campestris pv. campestris str. ATCC 33913
|
231 |
+
'113': Xanthomonas oryzae pv. oryzae KACC 10331
|
232 |
+
'114': Xylella fastidiosa 9a5c
|
233 |
+
'115': Yersinia enterocolitica subsp. enterocolitica 8081
|
234 |
+
'116': Yersinia pestis CO92 ASM906v1
|
235 |
+
'117': Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 ZM4
|
236 |
+
'118': '[Bacillus thuringiensis] serovar konkukian str. 97-27'
|
237 |
+
'119': '[Pseudomonas syringae] pv. tomato str. DC3000'
|
238 |
+
'120': homo sapiens
|
239 |
+
splits:
|
240 |
+
- name: train
|
241 |
+
num_bytes: 683959051
|
242 |
+
num_examples: 1000000
|
243 |
+
download_size: 143743824
|
244 |
+
dataset_size: 683959051
|
245 |
+
configs:
|
246 |
+
- config_name: default
|
247 |
+
data_files:
|
248 |
+
- split: train
|
249 |
+
path: data/train-*
|
250 |
+
---
|
251 |
+
# Dataset Card for "autotrain-data-species_classify"
|
252 |
+
|
253 |
+
[More Information needed](https://github.com/huggingface/datasets/blob/main/CONTRIBUTING.md#how-to-contribute-to-the-dataset-cards)
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