Datasets:
proteinglm
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Update README.md
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README.md
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path: data/valid-*
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- split: test
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path: data/test-*
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---
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path: data/valid-*
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- split: test
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path: data/test-*
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license: apache-2.0
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task_categories:
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- text-classification
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tags:
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- chemistry
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- biology
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size_categories:
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- 100K<n<1M
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---
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# Dataset Card for Temperature Stability Dataset
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### Dataset Summary
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The accurate prediction of protein thermal stability has far-reaching implications in both academic and industrial spheres. This task primarily aims to predict a protein’s capacity to preserve its structural stability under a temperature condition of 65 degrees Celsius.
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## Dataset Structure
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### Data Instances
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For each instance, there is a string representing the protein sequence and an integer label indicating whether the protein can maintain its structural stability at a temperature of 65 degrees Celsius. See the [temperature stability dataset viewer](https://huggingface.co/datasets/Bo1015/temperature_stability/viewer) to explore more examples.
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```
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{'seq':'MEHVIDNFDNIDKCLKCGKPIKVVKLKYIKKKIENIPNSHLINFKYCSKCKRENVIENL'
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'label':1}
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```
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The average for the `seq` and the `label` are provided below:
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| Feature | Mean Count |
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| ---------- | ---------------- |
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| seq | 300 |
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### Data Fields
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- `seq`: a string containing the protein sequence
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- `label`: an integer label indicating the structural stability of each sequence.
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### Data Splits
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The temperature stability dataset has 3 splits: _train_, _valid_, and _test_. Below are the statistics of the dataset.
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| Dataset Split | Number of Instances in Split |
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| ------------- | ------------------------------------------- |
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| Train | 283,057 |
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| Valid | 62,973 |
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| Test | 73,205 |
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### Source Data
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#### Initial Data Collection and Normalization
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We adapted the dataset strategy from [TemStaPro](https://academic.oup.com/bioinformatics/article/40/4/btae157/7632735).
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### Licensing Information
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The dataset is released under the [Apache-2.0 License](http://www.apache.org/licenses/LICENSE-2.0).
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### Citation
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If you find our work useful, please consider citing the following paper:
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```
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@misc{chen2024xtrimopglm,
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title={xTrimoPGLM: unified 100B-scale pre-trained transformer for deciphering the language of protein},
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author={Chen, Bo and Cheng, Xingyi and Li, Pan and Geng, Yangli-ao and Gong, Jing and Li, Shen and Bei, Zhilei and Tan, Xu and Wang, Boyan and Zeng, Xin and others},
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year={2024},
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eprint={2401.06199},
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archivePrefix={arXiv},
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primaryClass={cs.CL},
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note={arXiv preprint arXiv:2401.06199}
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}
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```
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