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Datasets:
imageomics
/
Curated_GoldStandard_Hoyal_Cuthill

Tasks:
Image Classification
Modalities:
Image
Formats:
imagefolder
Size:
1K - 10K
Tags:
butterfly
heliconius erato
heliconius melpomene
full body
dorsal
RGB
DOI:
Libraries:
Datasets
License:
Dataset card Viewer Files Community
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egrace479 commited on
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d132017
·
1 Parent(s): 66dc94d

updated README formatting and add links

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  1. README.md +55 -55
README.md CHANGED
@@ -52,63 +52,63 @@ This dataset card aims to be a base template for new datasets. It has been gener
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  ## Dataset Structure
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  ```
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- |-- `dorsal_images_cuthill`
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- | |
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- | |-- `10427965_D_lowres.tif`
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- | |
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- | |-- `10427966_D_lowres.tif
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- | |
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- | | ...
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  |
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- |-- `Acuities`
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- | |
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- | |-- `train_bird`
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- | | |
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- | | |-- `erato_cyrbia`
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- | | |
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- | | |-- `erato_etylus`
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- | | |
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- | | | ...
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- | |
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- | |-- `test_bird`
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- | | |
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- | | |-- `erato_cyrbia`
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- | | |
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- | | |-- `erato_etylus`
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- | | |
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- | | | ...
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- | |
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- | |-- `train_butterfly`
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- | | |
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- | | |-- `erato_cyrbia`
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- | | |
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- | | |-- `erato_etylus`
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- | | |
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- | | | ...
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- | |
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- | |-- `test_butterfly`
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  | |
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- | |-- `erato_cyrbia`
 
 
 
 
 
 
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  | |
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- | |-- `erato_etylus`
 
 
 
 
 
 
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  | |
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- | | ...
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  |
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- |-- `train`
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- | |
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- | |-- `erato_cyrbia`
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- | |
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- | |-- `erato_etylus`
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- | |
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- | | ...
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  |
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- |-- `test`
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- |
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- |-- `erato_cyrbia`
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- |
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- |-- `erato_etylus`
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- |
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- | ...
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  ```
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  ### Data Instances
@@ -123,7 +123,7 @@ This dataset card aims to be a base template for new datasets. It has been gener
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  ### Data Fields
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- **In [Hoyal_Cuthill_GoldStandard_metadata_cleaned.csv]():**
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  * `NHM_Specimen`: Natural History Museum Specimen number
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  * `Image_filename`: filename of image of specimen
@@ -140,12 +140,12 @@ This dataset card aims to be a base template for new datasets. It has been gener
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  * `lon`: longitude where specimen was collected
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  * `speciesdesig`: species designation, first initial of species '.' subspecies (eg., 'm. rosina')
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- [Train_Test_Curated_GoldStandard_Hoyal_Cuthill.csv]() has three additional columns:
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  * `Image_filename_png`: filename of (png) image of specimen, `dorsal_images_cuthill/` + `<Image_filename_png>` is the filepath for the processed dorsal image
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  * `subset`: whether this is part of the training or test set (`train` or `test`)
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  * `filepath`: the filepath for the train or test image
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- [Acuity_Curated_GoldStandard_Hoyal_Cuthill.csv]() also has `Image_filename_png` and `subset`, but `subset` references the bird and butterfly acuity training and test sets. Additionally, it has columns:
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  * `bird_filepath`: the filepath for the bird acuity version of the image
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  * `butterfly_filepath`: the filepath for the butterfly acuity version of the image
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@@ -158,7 +158,7 @@ RGB training images are in `train` folder and testing are in `test`.
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  For bird and butterfly acuities, their respective training and test images are in the `train_bird` (`train_butterfly`) and `test_bird` (`test_butterfly`) folders.
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- All of these folders are further subdivided by the subspecies. Filepaths to access these images are provided in [Train_Test_Curated_GoldStandard_Hoyal_Cuthill.csv]() and [Acuity_Curated_GoldStandard_Hoyal_Cuthill.csv](), respectively.
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  ## Dataset Creation
 
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  ## Dataset Structure
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  ```
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+ |-- dorsal_images_cuthill
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+ | |
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+ | |-- 10427965_D_lowres.tif
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+ | |
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+ | |-- 10427966_D_lowres.tif
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+ | |
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+ | | ...
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  |
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+ |-- Acuities
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  | |
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+ | |-- train_bird
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+ | | |
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+ | | |-- erato_cyrbia
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+ | | |
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+ | | |-- erato_etylus
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+ | | |
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+ | | | ...
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  | |
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+ | |-- test_bird
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+ | | |
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+ | | |-- erato_cyrbia
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+ | | |
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+ | | |-- erato_etylus
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+ | | |
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+ | | | ...
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  | |
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+ | |-- train_butterfly
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+ | | |
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+ | | |-- erato_cyrbia
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+ | | |
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+ | | |-- erato_etylus
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+ | | |
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+ | | | ...
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+ | |
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+ | |-- test_butterfly
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+ | |
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+ | |-- erato_cyrbia
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+ | |
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+ | |-- erato_etylus
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+ | |
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+ | | ...
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  |
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+ |-- train
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+ | |
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+ | |-- erato_cyrbia
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+ | |
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+ | |-- erato_etylus
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+ | |
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+ | | ...
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  |
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+ |-- test
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+ |
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+ |-- erato_cyrbia
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+ |
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+ |-- erato_etylus
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+ |
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+ | ...
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  ```
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  ### Data Instances
 
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  ### Data Fields
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+ **In [Hoyal_Cuthill_GoldStandard_metadata_cleaned.csv](https://huggingface.co/datasets/imageomics/Curated_GoldStandard_Hoyal_Cuthill/edit/main/Hoyal_Cuthill_GoldStandard_metadata_cleaned.csv):**
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  * `NHM_Specimen`: Natural History Museum Specimen number
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  * `Image_filename`: filename of image of specimen
 
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  * `lon`: longitude where specimen was collected
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  * `speciesdesig`: species designation, first initial of species '.' subspecies (eg., 'm. rosina')
142
 
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+ [Train_Test_Curated_GoldStandard_Hoyal_Cuthill.csv](https://huggingface.co/datasets/imageomics/Curated_GoldStandard_Hoyal_Cuthill/edit/main/Train_Test_Curated_GoldStandard_Hoyal_Cuthill.csv) has three additional columns:
144
  * `Image_filename_png`: filename of (png) image of specimen, `dorsal_images_cuthill/` + `<Image_filename_png>` is the filepath for the processed dorsal image
145
  * `subset`: whether this is part of the training or test set (`train` or `test`)
146
  * `filepath`: the filepath for the train or test image
147
 
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+ [Acuity_Curated_GoldStandard_Hoyal_Cuthill.csv](https://huggingface.co/datasets/imageomics/Curated_GoldStandard_Hoyal_Cuthill/edit/main/Acuity_Curated_GoldStandard_Hoyal_Cuthill.csv) also has `Image_filename_png` and `subset`, but `subset` references the bird and butterfly acuity training and test sets. Additionally, it has columns:
149
  * `bird_filepath`: the filepath for the bird acuity version of the image
150
  * `butterfly_filepath`: the filepath for the butterfly acuity version of the image
151
 
 
158
 
159
  For bird and butterfly acuities, their respective training and test images are in the `train_bird` (`train_butterfly`) and `test_bird` (`test_butterfly`) folders.
160
 
161
+ All of these folders are further subdivided by the subspecies. Filepaths to access these images are provided in [Train_Test_Curated_GoldStandard_Hoyal_Cuthill.csv](https://huggingface.co/datasets/imageomics/Curated_GoldStandard_Hoyal_Cuthill/edit/main/Train_Test_Curated_GoldStandard_Hoyal_Cuthill.csv) and [Acuity_Curated_GoldStandard_Hoyal_Cuthill.csv](https://huggingface.co/datasets/imageomics/Curated_GoldStandard_Hoyal_Cuthill/edit/main/Acuity_Curated_GoldStandard_Hoyal_Cuthill.csv), respectively.
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  ## Dataset Creation