alexandria / jobs.py
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add preprocess scripts
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"""Module for submitting jobs"""
import subprocess
def submit_slurm(
cmd: str,
time: str,
partition: str,
nodes: int,
ntasks_per_node: int,
job_name: str,
account: str,
**kwargs,
):
"""Submit a job to the slurm scheduler."""
scmd = [
*f"""sbatch
--time={time}
--account={account}
--qos={partition}
--job-name={job_name}
--output=%x-%j.out
--error=%x-%j.err
--nodes={nodes}
--ntasks-per-node={ntasks_per_node}""".replace("'", "").split(),
]
if kwargs.get("constraint", False):
scmd += [f"--constraint={kwargs['constraint']}"]
if kwargs.get("exclude", False):
scmd += ["--exclude"]
scmd += ["--wrap", cmd]
return subprocess.run(scmd, check=True)