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Update parquet files
Browse files- .gitattributes +0 -37
- README.md +0 -15
- data/dev-00000-of-00001.parquet → Seledorn--SwissProt-Pfam/parquet-dev.parquet +2 -2
- data/test-00000-of-00001.parquet → Seledorn--SwissProt-Pfam/parquet-test.parquet +2 -2
- data/train-00000-of-00001.parquet → Seledorn--SwissProt-Pfam/parquet-train.parquet +2 -2
- dataset_infos.json +0 -1
- idx_mapping.json +0 -0
.gitattributes
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*.7z filter=lfs diff=lfs merge=lfs -text
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# Audio files - uncompressed
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README.md
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---
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language:
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- protein sequences
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datasets:
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- Swissprot
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tags:
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- Protein
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- PFam
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---
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Swissprot is a high quality manually annotated protein database. The dataset contains annotations with the functional properties of the proteins. Here we extract proteins with PFam labels.
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The dataset is ported from Protinfer: https://github.com/google-research/proteinfer.
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The Pfam-labels are extracted and indexed, the mapping is provided in `idx_mapping.json`. Proteins without Pfam tags are removed.
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data/dev-00000-of-00001.parquet → Seledorn--SwissProt-Pfam/parquet-dev.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:
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size
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version https://git-lfs.github.com/spec/v1
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oid sha256:407fdc59dccc366e018662424c81a9bdb5537e72a45abc0c1d77bef40f01307c
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size 17987262
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data/test-00000-of-00001.parquet → Seledorn--SwissProt-Pfam/parquet-test.parquet
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size
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oid sha256:4a4bec9037414e0120d5c306460329f38eb6c7a6acac77ad416d4188838ec990
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size 17840056
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data/train-00000-of-00001.parquet → Seledorn--SwissProt-Pfam/parquet-train.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:1268d29a7ffbf0778075af5045afb9a1c95e7eeadaaddf9fdc8d763257a98cff
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size 143520954
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dataset_infos.json
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{"Seledorn--SwissProt-Pfam": {"description": "", "citation": "", "homepage": "", "license": "", "features": {"seq": {"dtype": "string", "id": null, "_type": "Value"}, "labels": {"feature": {"dtype": "int64", "id": null, "_type": "Value"}, "length": -1, "id": null, "_type": "Sequence"}, "labels_str": {"dtype": "string", "id": null, "_type": "Value"}, "id": {"dtype": "string", "id": null, "_type": "Value"}}, "post_processed": null, "supervised_keys": null, "task_templates": null, "builder_name": "json", "config_name": "default", "version": {"version_str": "0.0.0", "description": null, "major": 0, "minor": 0, "patch": 0}, "splits": {"dev": {"name": "dev", "num_bytes": 21846940, "num_examples": 51557, "dataset_name": "SwissProt-Pfam"}, "test": {"name": "test", "num_bytes": 21525965, "num_examples": 50530, "dataset_name": "SwissProt-Pfam"}, "train": {"name": "train", "num_bytes": 173480322, "num_examples": 409267, "dataset_name": "SwissProt-Pfam"}}, "download_checksums": null, "download_size": 186773970, "post_processing_size": null, "dataset_size": 216853227, "size_in_bytes": 403627197}}
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idx_mapping.json
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