anicolson commited on
Commit
458f5af
1 Parent(s): aa685c6

Upload model

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Files changed (1) hide show
  1. dataset.py +2 -5
dataset.py CHANGED
@@ -1,12 +1,9 @@
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  import os
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- import struct
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- import lmdb
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- import numpy as np
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  import pandas as pd
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  import torch
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  from torch.utils.data import Dataset
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- from torchvision.io import decode_image, read_image
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  from tools.utils import mimic_cxr_image_path
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@@ -70,7 +67,7 @@ class StudyIDEDStayIDSubset(Dataset):
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  assert self.extension == 'jpg' or self.extension == 'dcm'
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- if self.dataset_dir is not None and self.images_rocksdb_path is None:
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  if self.extension == 'jpg':
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  if 'physionet.org/files/mimic-cxr-jpg/2.0.0/files' not in self.dataset_dir:
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  self.dataset_dir = os.path.join(self.dataset_dir, 'physionet.org/files/mimic-cxr-jpg/2.0.0/files')
 
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  import os
 
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  import pandas as pd
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  import torch
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  from torch.utils.data import Dataset
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+ from torchvision.io import read_image
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  from tools.utils import mimic_cxr_image_path
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  assert self.extension == 'jpg' or self.extension == 'dcm'
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+ if self.dataset_dir is not None:
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  if self.extension == 'jpg':
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  if 'physionet.org/files/mimic-cxr-jpg/2.0.0/files' not in self.dataset_dir:
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  self.dataset_dir = os.path.join(self.dataset_dir, 'physionet.org/files/mimic-cxr-jpg/2.0.0/files')