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configuration_chexagent.py

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+# coding=utf-8
+# Copyright 2023 Microsoft and the HuggingFace Inc. team. All rights reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+""" Phi model configuration"""
+
+from transformers.configuration_utils import PretrainedConfig
+from transformers.utils import logging
+
+logger = logging.get_logger(__name__)
+
+PHI_PRETRAINED_CONFIG_ARCHIVE_MAP = {
+    "microsoft/phi-2": "https://huggingface.co/microsoft/phi-2/resolve/main/config.json",
+}
+
+
+class CheXagentConfig(PretrainedConfig):
+    r"""
+    This is the configuration class to store the configuration of a [`PhiModel`]. It is used to instantiate an Phi
+    model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
+    defaults will yield a similar configuration to that of the Phi
+    [microsoft/phi-1](https://huggingface.co/microsoft/phi-1).
+    Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
+    documentation from [`PretrainedConfig`] for more information.
+    Args:
+        vocab_size (`int`, *optional*, defaults to 51200):
+            Vocabulary size of the Phi model. Defines the number of different tokens that can be represented by the
+            `inputs_ids` passed when calling [`PhiModel`].
+        hidden_size (`int`, *optional*, defaults to 2048):
+            Dimension of the hidden representations.
+        intermediate_size (`int`, *optional*, defaults to 8192):
+            Dimension of the MLP representations.
+        num_hidden_layers (`int`, *optional*, defaults to 24):
+            Number of hidden layers in the Transformer decoder.
+        num_attention_heads (`int`, *optional*, defaults to 32):
+            Number of attention heads for each attention layer in the Transformer decoder.
+        num_key_value_heads (`int`, *optional*):
+            This is the number of key_value heads that should be used to implement Grouped Query Attention. If
+            `num_key_value_heads=num_attention_heads`, the model will use Multi Head Attention (MHA), if
+            `num_key_value_heads=1 the model will use Multi Query Attention (MQA) otherwise GQA is used. When
+            converting a multi-head checkpoint to a GQA checkpoint, each group key and value head should be constructed
+            by meanpooling all the original heads within that group. For more details checkout [this
+            paper](https://arxiv.org/pdf/2305.13245.pdf). If it is not specified, will default to
+            `num_attention_heads`.
+        resid_pdrop (`float`, *optional*, defaults to 0.0):
+            Dropout probability for mlp outputs.
+        embd_pdrop (`int`, *optional*, defaults to 0.0):
+            The dropout ratio for the embeddings.
+        attention_dropout (`float`, *optional*, defaults to 0.0):
+            The dropout ratio after computing the attention scores.
+        hidden_act (`str` or `function`, *optional*, defaults to `"gelu_new"`):
+            The non-linear activation function (function or string) in the decoder.
+        max_position_embeddings (`int`, *optional*, defaults to 2048):
+            The maximum sequence length that this model might ever be used with. Phi-1 and Phi-1.5 supports up to 2048
+            tokens.
+        initializer_range (`float`, *optional*, defaults to 0.02):
+            The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
+        layer_norm_eps (`float`, *optional*, defaults to 1e-05):
+            The epsilon used by the rms normalization layers.
+        use_cache (`bool`, *optional*, defaults to `True`):
+            Whether or not the model should return the last key/values attentions (not used by all models). Only
+            relevant if `config.is_decoder=True`. Whether to tie weight embeddings or not.
+        tie_word_embeddings (`bool`, *optional*, defaults to `False`):
+            Whether to tie weight embeddings
+        rope_theta (`float`, *optional*, defaults to 10000.0):
+            The base period of the RoPE embeddings.
+        rope_scaling (`Dict`, *optional*):
+            Dictionary containing the scaling configuration for the RoPE embeddings. Currently supports two scaling
+            strategies: linear and dynamic. Their scaling factor must be an float greater than 1. The expected format
+            is `{"type": strategy name, "factor": scaling factor}`. When using this flag, don't update
+            `max_position_embeddings` to the expected new maximum. See the following thread for more information on how
+            these scaling strategies behave:
+            https://www.reddit.com/r/LocalPersimmon/comments/14mrgpr/dynamically_scaled_rope_further_increases/. This
+            is an experimental feature, subject to breaking API changes in future versions.
+        partial_rotary_factor (`float`, *optional*, defaults to 0.5):
+            Percentage of the query and keys which will have rotary embedding.
+        qk_layernorm (`bool`, *optional*, defaults to `False`):
+            Whether or not to normalize the Queries and Keys after projecting the hidden states.
+        bos_token_id (`int`, *optional*, defaults to 1):
+            Denotes beginning of sequences token id.
+        eos_token_id (`int`, *optional*, defaults to 2):
+            Denotes end of sequences token id.
+    Example:
+    ```python
+    >>> from transformers import PhiModel, PhiConfig
+    >>> # Initializing a Phi-1 style configuration
+    >>> configuration = PhiConfig.from_pretrained("microsoft/phi-1")
+    >>> # Initializing a model from the configuration
+    >>> model = PhiModel(configuration)
+    >>> # Accessing the model configuration
+    >>> configuration = model.config
+    ```"""
+
+    model_type = "phi"
+    keys_to_ignore_at_inference = ["past_key_values"]
+
+    def __init__(
+            self,
+            vocab_size=51200,
+            hidden_size=2048,
+            intermediate_size=8192,
+            num_hidden_layers=24,
+            num_attention_heads=32,
+            num_key_value_heads=None,
+            resid_pdrop=0.0,
+            embd_pdrop=0.0,
+            attention_dropout=0.0,
+            hidden_act="gelu_new",
+            max_position_embeddings=2048,
+            initializer_range=0.02,
+            layer_norm_eps=1e-5,
+            use_cache=True,
+            tie_word_embeddings=False,
+            rope_theta=10000.0,
+            rope_scaling=None,
+            partial_rotary_factor=0.5,
+            qk_layernorm=False,
+            bos_token_id=1,
+            eos_token_id=2,
+            **kwargs,
+    ):
+        self.vocab_size = vocab_size
+        self.hidden_size = hidden_size
+        self.intermediate_size = intermediate_size
+        self.num_hidden_layers = num_hidden_layers
+        self.num_attention_heads = num_attention_heads
+
+        if num_key_value_heads is None:
+            num_key_value_heads = num_attention_heads
+
+        self.num_key_value_heads = num_key_value_heads
+        self.resid_pdrop = resid_pdrop
+        self.embd_pdrop = embd_pdrop
+        self.attention_dropout = attention_dropout
+        self.hidden_act = hidden_act
+        self.max_position_embeddings = max_position_embeddings
+        self.initializer_range = initializer_range
+        self.layer_norm_eps = layer_norm_eps
+        self.use_cache = use_cache
+        self.rope_theta = rope_theta
+        self.rope_scaling = rope_scaling
+        self.partial_rotary_factor = partial_rotary_factor
+        self.qk_layernorm = qk_layernorm
+        self._rope_scaling_validation()
+
+        super().__init__(
+            bos_token_id=bos_token_id,
+            eos_token_id=eos_token_id,
+            tie_word_embeddings=tie_word_embeddings,
+            **kwargs,
+        )
+
+    # Copied from transformers.models.llama.configuration_llama.LlamaConfig._rope_scaling_validation
+    def _rope_scaling_validation(self):
+        """
+        Validate the `rope_scaling` configuration.
+        """
+        if self.rope_scaling is None:
+            return
+
+        if not isinstance(self.rope_scaling, dict) or len(self.rope_scaling) != 2:
+            raise ValueError(
+                "`rope_scaling` must be a dictionary with with two fields, `type` and `factor`, "
+                f"got {self.rope_scaling}"
+            )
+        rope_scaling_type = self.rope_scaling.get("type", None)
+        rope_scaling_factor = self.rope_scaling.get("factor", None)
+        if rope_scaling_type is None or rope_scaling_type not in ["linear", "dynamic"]:
+            raise ValueError(
+                f"`rope_scaling`'s type field must be one of ['linear', 'dynamic'], got {rope_scaling_type}"
+            )
+        if rope_scaling_factor is None or not isinstance(rope_scaling_factor, float) or rope_scaling_factor <= 1.0:
+            raise ValueError(f"`rope_scaling`'s factor field must be a float > 1, got {rope_scaling_factor}")

modeling_chexagent.py

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+# coding=utf-8
+# Copyright 2023 Microsoft and the HuggingFace Inc. team. All rights reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+""" PyTorch Phi model."""
+
+import math
+from typing import List, Optional, Tuple, Union
+
+import torch
+import torch.nn.functional as F
+import torch.utils.checkpoint
+from torch import nn
+from torch.nn import CrossEntropyLoss
+from transformers.activations import ACT2FN
+from transformers.cache_utils import Cache, DynamicCache
+from transformers.modeling_attn_mask_utils import _prepare_4d_causal_attention_mask
+from transformers.modeling_outputs import (
+    BaseModelOutputWithPast,
+    CausalLMOutputWithPast,
+)
+from transformers.modeling_utils import PreTrainedModel
+from transformers.utils import (
+    add_start_docstrings,
+    add_start_docstrings_to_model_forward,
+    is_flash_attn_greater_or_equal_2_10,
+    logging,
+)
+
+from .configuration_chexagent import CheXagentConfig
+from .modeling_visual import CLIPModel
+from .tokenization_chexagent import CheXagentTokenizer
+
+try:
+    from flash_attn import flash_attn_func, flash_attn_varlen_func
+    from flash_attn.bert_padding import index_first_axis, pad_input, unpad_input  # noqa
+except:
+    pass
+
+logger = logging.get_logger(__name__)
+
+_CHECKPOINT_FOR_DOC = "microsoft/phi-2"
+_CONFIG_FOR_DOC = "CheXagentConfig"
+
+PHI_PRETRAINED_MODEL_ARCHIVE_LIST = [
+    "microsoft/phi-2",
+    # See all Phi models at https://huggingface.co/models?filter=phi
+]
+
+
+# Copied from transformers.models.llama.modeling_llama._get_unpad_data
+def _get_unpad_data(attention_mask):
+    seqlens_in_batch = attention_mask.sum(dim=-1, dtype=torch.int32)
+    indices = torch.nonzero(attention_mask.flatten(), as_tuple=False).flatten()
+    max_seqlen_in_batch = seqlens_in_batch.max().item()
+    cu_seqlens = F.pad(torch.cumsum(seqlens_in_batch, dim=0, dtype=torch.torch.int32), (1, 0))
+    return (
+        indices,
+        cu_seqlens,
+        max_seqlen_in_batch,
+    )
+
+
+# Copied from transformers.models.llama.modeling_llama.LlamaRotaryEmbedding with Llama->Phi
+class PhiRotaryEmbedding(nn.Module):
+    def __init__(self, dim, max_position_embeddings=2048, base=10000, device=None):
+        super().__init__()
+
+        self.dim = dim
+        self.max_position_embeddings = max_position_embeddings
+        self.base = base
+        inv_freq = 1.0 / (self.base ** (torch.arange(0, self.dim, 2).float().to(device) / self.dim))
+        self.register_buffer("inv_freq", inv_freq, persistent=False)
+
+        # Build here to make `torch.jit.trace` work.
+        self._set_cos_sin_cache(
+            seq_len=max_position_embeddings, device=self.inv_freq.device, dtype=torch.get_default_dtype()
+        )
+
+    def _set_cos_sin_cache(self, seq_len, device, dtype):
+        self.max_seq_len_cached = seq_len
+        t = torch.arange(self.max_seq_len_cached, device=device, dtype=self.inv_freq.dtype)
+
+        freqs = torch.outer(t, self.inv_freq)
+        # Different from paper, but it uses a different permutation in order to obtain the same calculation
+        emb = torch.cat((freqs, freqs), dim=-1)
+        self.register_buffer("cos_cached", emb.cos().to(dtype), persistent=False)
+        self.register_buffer("sin_cached", emb.sin().to(dtype), persistent=False)
+
+    def forward(self, x, seq_len=None):
+        # x: [bs, num_attention_heads, seq_len, head_size]
+        if seq_len > self.max_seq_len_cached:
+            self._set_cos_sin_cache(seq_len=seq_len, device=x.device, dtype=x.dtype)
+
+        return (
+            self.cos_cached[:seq_len].to(dtype=x.dtype),
+            self.sin_cached[:seq_len].to(dtype=x.dtype),
+        )
+
+
+# Copied from transformers.models.llama.modeling_llama.LlamaLinearScalingRotaryEmbedding with Llama->Phi
+class PhiLinearScalingRotaryEmbedding(PhiRotaryEmbedding):
+    """PhiRotaryEmbedding extended with linear scaling. Credits to the Reddit user /u/kaiokendev"""
+
+    def __init__(self, dim, max_position_embeddings=2048, base=10000, device=None, scaling_factor=1.0):
+        self.scaling_factor = scaling_factor
+        super().__init__(dim, max_position_embeddings, base, device)
+
+    def _set_cos_sin_cache(self, seq_len, device, dtype):
+        self.max_seq_len_cached = seq_len
+        t = torch.arange(self.max_seq_len_cached, device=device, dtype=self.inv_freq.dtype)
+        t = t / self.scaling_factor
+
+        freqs = torch.outer(t, self.inv_freq)
+        # Different from paper, but it uses a different permutation in order to obtain the same calculation
+        emb = torch.cat((freqs, freqs), dim=-1)
+        self.register_buffer("cos_cached", emb.cos().to(dtype), persistent=False)
+        self.register_buffer("sin_cached", emb.sin().to(dtype), persistent=False)
+
+
+# Copied from transformers.models.llama.modeling_llama.LlamaDynamicNTKScalingRotaryEmbedding with Llama->Phi
+class PhiDynamicNTKScalingRotaryEmbedding(PhiRotaryEmbedding):
+    """PhiRotaryEmbedding extended with Dynamic NTK scaling. Credits to the Reddit users /u/bloc97 and /u/emozilla"""
+
+    def __init__(self, dim, max_position_embeddings=2048, base=10000, device=None, scaling_factor=1.0):
+        self.scaling_factor = scaling_factor
+        super().__init__(dim, max_position_embeddings, base, device)
+
+    def _set_cos_sin_cache(self, seq_len, device, dtype):
+        self.max_seq_len_cached = seq_len
+
+        if seq_len > self.max_position_embeddings:
+            base = self.base * (
+                    (self.scaling_factor * seq_len / self.max_position_embeddings) - (self.scaling_factor - 1)
+            ) ** (self.dim / (self.dim - 2))
+            inv_freq = 1.0 / (base ** (torch.arange(0, self.dim, 2).float().to(device) / self.dim))
+            self.register_buffer("inv_freq", inv_freq, persistent=False)
+
+        t = torch.arange(self.max_seq_len_cached, device=device, dtype=self.inv_freq.dtype)
+
+        freqs = torch.outer(t, self.inv_freq)
+        # Different from paper, but it uses a different permutation in order to obtain the same calculation
+        emb = torch.cat((freqs, freqs), dim=-1)
+        self.register_buffer("cos_cached", emb.cos().to(dtype), persistent=False)
+        self.register_buffer("sin_cached", emb.sin().to(dtype), persistent=False)
+
+
+# Copied from transformers.models.llama.modeling_llama.rotate_half
+def rotate_half(x):
+    """Rotates half the hidden dims of the input."""
+    x1 = x[..., : x.shape[-1] // 2]
+    x2 = x[..., x.shape[-1] // 2:]
+    return torch.cat((-x2, x1), dim=-1)
+
+
+# Copied from transformers.models.llama.modeling_llama.apply_rotary_pos_emb
+def apply_rotary_pos_emb(q, k, cos, sin, position_ids, unsqueeze_dim=1):
+    """Applies Rotary Position Embedding to the query and key tensors.
+    Args:
+        q (`torch.Tensor`): The query tensor.
+        k (`torch.Tensor`): The key tensor.
+        cos (`torch.Tensor`): The cosine part of the rotary embedding.
+        sin (`torch.Tensor`): The sine part of the rotary embedding.
+        position_ids (`torch.Tensor`):
+            The position indices of the tokens corresponding to the query and key tensors. For example, this can be
+            used to pass offsetted position ids when working with a KV-cache.
+        unsqueeze_dim (`int`, *optional*, defaults to 1):
+            The 'unsqueeze_dim' argument specifies the dimension along which to unsqueeze cos[position_ids] and
+            sin[position_ids] so that they can be properly broadcasted to the dimensions of q and k. For example, note
+            that cos[position_ids] and sin[position_ids] have the shape [batch_size, seq_len, head_dim]. Then, if q and
+            k have the shape [batch_size, heads, seq_len, head_dim], then setting unsqueeze_dim=1 makes
+            cos[position_ids] and sin[position_ids] broadcastable to the shapes of q and k. Similarly, if q and k have
+            the shape [batch_size, seq_len, heads, head_dim], then set unsqueeze_dim=2.
+    Returns:
+        `tuple(torch.Tensor)` comprising of the query and key tensors rotated using the Rotary Position Embedding.
+    """
+    cos = cos[position_ids].unsqueeze(unsqueeze_dim)
+    sin = sin[position_ids].unsqueeze(unsqueeze_dim)
+    q_embed = (q * cos) + (rotate_half(q) * sin)
+    k_embed = (k * cos) + (rotate_half(k) * sin)
+    return q_embed, k_embed
+
+
+# Copied from transformers.models.clip.modeling_clip.CLIPMLP with CLIP->Phi
+class PhiMLP(nn.Module):
+    def __init__(self, config):
+        super().__init__()
+        self.config = config
+        self.activation_fn = ACT2FN[config.hidden_act]
+        self.fc1 = nn.Linear(config.hidden_size, config.intermediate_size)
+        self.fc2 = nn.Linear(config.intermediate_size, config.hidden_size)
+
+    def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
+        hidden_states = self.fc1(hidden_states)
+        hidden_states = self.activation_fn(hidden_states)
+        hidden_states = self.fc2(hidden_states)
+        return hidden_states
+
+
+# Copied from transformers.models.llama.modeling_llama.repeat_kv with llama->phi
+def repeat_kv(hidden_states: torch.Tensor, n_rep: int) -> torch.Tensor:
+    """
+    This is the equivalent of torch.repeat_interleave(x, dim=1, repeats=n_rep). The hidden states go from (batch,
+    num_key_value_heads, seqlen, head_dim) to (batch, num_attention_heads, seqlen, head_dim)
+    """
+    batch, num_key_value_heads, slen, head_dim = hidden_states.shape
+    if n_rep == 1:
+        return hidden_states
+    hidden_states = hidden_states[:, :, None, :, :].expand(batch, num_key_value_heads, n_rep, slen, head_dim)
+    return hidden_states.reshape(batch, num_key_value_heads * n_rep, slen, head_dim)
+
+
+class PhiAttention(nn.Module):
+    """Multi-headed attention from 'Attention Is All You Need' paper"""
+
+    def __init__(self, config: CheXagentConfig, layer_idx: Optional[int] = None):
+        super().__init__()
+        self.config = config
+        self.layer_idx = layer_idx
+        if layer_idx is None:
+            logger.warning_once(
+                f"Instantiating {self.__class__.__name__} without passing `layer_idx` is not recommended and will "
+                "to errors during the forward call, if caching is used. Please make sure to provide a `layer_idx` "
+                "when creating this class."
+            )
+
+        self.attention_dropout = config.attention_dropout
+        self.hidden_size = config.hidden_size
+        self.num_heads = config.num_attention_heads
+        self.head_dim = self.hidden_size // self.num_heads
+        self.num_key_value_heads = config.num_key_value_heads
+        self.num_key_value_groups = self.num_heads // self.num_key_value_heads
+        self.max_position_embeddings = config.max_position_embeddings
+        self.rope_theta = config.rope_theta
+        self.partial_rotary_factor = config.partial_rotary_factor
+        self.is_causal = True
+
+        if (self.head_dim * self.num_heads) != self.hidden_size:
+            raise ValueError(
+                f"hidden_size must be divisible by num_heads (got `hidden_size`: {self.hidden_size}"
+                f" and `num_heads`: {self.num_heads})."
+            )
+
+        self.q_proj = nn.Linear(self.hidden_size, self.num_heads * self.head_dim, bias=True)
+        self.k_proj = nn.Linear(self.hidden_size, self.num_key_value_heads * self.head_dim, bias=True)
+        self.v_proj = nn.Linear(self.hidden_size, self.num_key_value_heads * self.head_dim, bias=True)
+        self.dense = nn.Linear(self.num_heads * self.head_dim, self.hidden_size, bias=True)
+
+        self.qk_layernorm = config.qk_layernorm
+        if self.qk_layernorm:
+            self.q_layernorm = nn.LayerNorm(
+                config.hidden_size // self.num_heads, eps=config.layer_norm_eps, elementwise_affine=True
+            )
+            self.k_layernorm = nn.LayerNorm(
+                config.hidden_size // self.num_heads, eps=config.layer_norm_eps, elementwise_affine=True
+            )
+
+        self._init_rope()
+
+    def _init_rope(self):
+        if self.config.rope_scaling is None:
+            self.rotary_emb = PhiRotaryEmbedding(
+                int(self.partial_rotary_factor * self.head_dim),
+                max_position_embeddings=self.max_position_embeddings,
+                base=self.rope_theta,
+            )
+        else:
+            scaling_type = self.config.rope_scaling["type"]
+            scaling_factor = self.config.rope_scaling["factor"]
+            if scaling_type == "linear":
+                self.rotary_emb = PhiLinearScalingRotaryEmbedding(
+                    int(self.partial_rotary_factor * self.head_dim),
+                    max_position_embeddings=self.max_position_embeddings,
+                    scaling_factor=scaling_factor,
+                    base=self.rope_theta,
+                )
+            elif scaling_type == "dynamic":
+                self.rotary_emb = PhiDynamicNTKScalingRotaryEmbedding(
+                    int(self.partial_rotary_factor * self.head_dim),
+                    max_position_embeddings=self.max_position_embeddings,
+                    scaling_factor=scaling_factor,
+                    base=self.rope_theta,
+                )
+            else:
+                raise ValueError(f"Unknown RoPE scaling type {scaling_type}")
+
+    # Phi-2 has an attention overflow issue (with FP16) and requires autocast to be disabled
+    @torch.autocast("cpu", enabled=False)
+    @torch.autocast("cuda", enabled=False)
+    def forward(
+            self,
+            hidden_states: torch.Tensor,
+            attention_mask: Optional[torch.Tensor] = None,
+            position_ids: Optional[torch.LongTensor] = None,
+            past_key_value: Optional[Cache] = None,
+            output_attentions: bool = False,
+            use_cache: bool = False,
+    ) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
+        bsz, q_len, _ = hidden_states.size()
+
+        query_states = self.q_proj(hidden_states)
+        key_states = self.k_proj(hidden_states)
+        value_states = self.v_proj(hidden_states)
+
+        if self.qk_layernorm:
+            query_states = self.q_layernorm(query_states)
+            key_states = self.k_layernorm(key_states)
+
+        query_states = query_states.view(bsz, q_len, self.num_heads, self.head_dim).transpose(1, 2)
+        key_states = key_states.view(bsz, q_len, self.num_key_value_heads, self.head_dim).transpose(1, 2)
+        value_states = value_states.view(bsz, q_len, self.num_key_value_heads, self.head_dim).transpose(1, 2)
+
+        kv_seq_len = key_states.shape[-2]
+        if past_key_value is not None:
+            if self.layer_idx is None:
+                raise ValueError(
+                    f"The cache structure has changed since version v4.36. If you are using {self.__class__.__name__} "
+                    "for auto-regressive decoding with k/v caching, please make sure to initialize the attention class "
+                    "with a layer index."
+                )
+            kv_seq_len += past_key_value.get_usable_length(kv_seq_len, self.layer_idx)
+        cos, sin = self.rotary_emb(value_states, seq_len=kv_seq_len)
+
+        # Partial rotary embedding
+        query_rot, query_pass = (
+            query_states[..., : self.rotary_emb.dim],
+            query_states[..., self.rotary_emb.dim:],
+        )
+        key_rot, key_pass = (
+            key_states[..., : self.rotary_emb.dim],
+            key_states[..., self.rotary_emb.dim:],
+        )
+        # [batch_size, seq_length, num_heads, head_dim // config.partial_rotary_factor]
+        query_rot, key_rot = apply_rotary_pos_emb(query_rot, key_rot, cos, sin, position_ids)
+
+        # [batch_size, seq_length, num_heads, head_dim]
+        query_states = torch.cat((query_rot, query_pass), dim=-1)
+        key_states = torch.cat((key_rot, key_pass), dim=-1)
+
+        if past_key_value is not None:
+            cache_kwargs = {"sin": sin, "cos": cos, "partial_rotation_size": self.rotary_emb.dim}
+            key_states, value_states = past_key_value.update(key_states, value_states, self.layer_idx, cache_kwargs)
+
+        key_states = repeat_kv(key_states, self.num_key_value_groups)
+        value_states = repeat_kv(value_states, self.num_key_value_groups)
+
+        # Queries and keys upcast to fp32 is required by Phi-2 to avoid overflow
+        attn_weights = torch.matmul(
+            query_states.to(torch.float32), key_states.to(torch.float32).transpose(2, 3)
+        ) / math.sqrt(self.head_dim)
+
+        if attn_weights.size() != (bsz, self.num_heads, q_len, kv_seq_len):
+            raise ValueError(
+                f"Attention weights should be of size {(bsz, self.num_heads, q_len, kv_seq_len)}, but is"
+                f" {attn_weights.size()}"
+            )
+
+        if attention_mask is not None:
+            if attention_mask.size() != (bsz, 1, q_len, kv_seq_len):
+                raise ValueError(
+                    f"Attention mask should be of size {(bsz, 1, q_len, kv_seq_len)}, but is {attention_mask.size()}"
+                )
+            attn_weights = attn_weights + attention_mask
+
+        # upcast attention to fp32
+        attn_weights = nn.functional.softmax(attn_weights, dim=-1, dtype=torch.float32).to(value_states.dtype)
+        attn_weights = nn.functional.dropout(attn_weights, p=self.attention_dropout, training=self.training)
+
+        attn_output = torch.matmul(attn_weights, value_states)
+
+        if attn_output.size() != (bsz, self.num_heads, q_len, self.head_dim):
+            raise ValueError(
+                f"`attn_output` should be of size {(bsz, self.num_heads, q_len, self.head_dim)}, but is"
+                f" {attn_output.size()}"
+            )
+
+        attn_output = attn_output.transpose(1, 2).contiguous()
+        attn_output = attn_output.reshape(bsz, q_len, self.hidden_size)
+
+        attn_output = self.dense(attn_output)
+
+        if not output_attentions:
+            attn_weights = None
+
+        return attn_output, attn_weights, past_key_value
+
+
+class PhiFlashAttention2(PhiAttention):
+    """
+    Phi flash attention module. This module inherits from `PhiAttention` as the weights of the module stays
+    untouched. The only required change would be on the forward pass where it needs to correctly call the public API of
+    flash attention and deal with padding tokens in case the input contains any of them.
+    """
+
+    # Copied from transformers.models.llama.modeling_llama.LlamaFlashAttention2.__init__
+    def __init__(self, *args, **kwargs):
+        super().__init__(*args, **kwargs)
+
+        # TODO: Should be removed once Flash Attention for RoCm is bumped to 2.1.
+        # flash_attn<2.1 generates top-left aligned causal mask, while what is needed here is bottom-right alignement, that was made default for flash_attn>=2.1. This attribute is used to handle this difference. Reference: https://github.com/Dao-AILab/flash-attention/releases/tag/v2.1.0.
+        # Beware that with flash_attn<2.1, using q_seqlen != k_seqlen (except for the case q_seqlen == 1) produces a wrong mask (top-left).
+        self._flash_attn_uses_top_left_mask = not is_flash_attn_greater_or_equal_2_10()
+
+    def forward(
+            self,
+            hidden_states: torch.Tensor,
+            attention_mask: Optional[torch.LongTensor] = None,
+            position_ids: Optional[torch.LongTensor] = None,
+            past_key_value: Optional[Cache] = None,
+            output_attentions: bool = False,
+            use_cache: bool = False,
+            **kwargs,
+    ) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
+        # PhiFlashAttention2 attention does not support output_attentions
+
+        output_attentions = False
+
+        bsz, q_len, _ = hidden_states.size()
+
+        query_states = self.q_proj(hidden_states)
+        key_states = self.k_proj(hidden_states)
+        value_states = self.v_proj(hidden_states)
+
+        if self.qk_layernorm:
+            query_states = self.q_layernorm(query_states)
+            key_states = self.k_layernorm(key_states)
+
+        # Flash attention requires the input to have the shape
+        # batch_size x seq_length x head_dim x hidden_dim
+        # therefore we just need to keep the original shape
+        query_states = query_states.view(bsz, q_len, self.num_heads, self.head_dim).transpose(1, 2)
+        key_states = key_states.view(bsz, q_len, self.num_key_value_heads, self.head_dim).transpose(1, 2)
+        value_states = value_states.view(bsz, q_len, self.num_key_value_heads, self.head_dim).transpose(1, 2)
+
+        kv_seq_len = key_states.shape[-2]
+        if past_key_value is not None:
+            kv_seq_len += past_key_value.get_usable_length(kv_seq_len, self.layer_idx)
+        cos, sin = self.rotary_emb(value_states, seq_len=kv_seq_len)
+
+        # Partial rotary embedding
+        query_rot, query_pass = (
+            query_states[..., : self.rotary_emb.dim],
+            query_states[..., self.rotary_emb.dim:],
+        )
+        key_rot, key_pass = (
+            key_states[..., : self.rotary_emb.dim],
+            key_states[..., self.rotary_emb.dim:],
+        )
+        # [batch_size, seq_length, num_heads, head_dim // config.partial_rotary_factor]
+        query_rot, key_rot = apply_rotary_pos_emb(query_rot, key_rot, cos, sin, position_ids)
+
+        # [batch_size, seq_length, num_heads, head_dim]
+        query_states = torch.cat((query_rot, query_pass), dim=-1)
+        key_states = torch.cat((key_rot, key_pass), dim=-1)
+
+        if past_key_value is not None:
+            cache_kwargs = {"sin": sin, "cos": cos, "partial_rotation_size": self.rotary_emb.dim}
+            key_states, value_states = past_key_value.update(key_states, value_states, self.layer_idx, cache_kwargs)
+
+        # TODO: These transpose are quite inefficient but Flash Attention requires the layout [batch_size, sequence_length, num_heads, head_dim]. We would need to refactor the KV cache
+        # to be able to avoid many of these transpose/reshape/view.
+        query_states = query_states.transpose(1, 2)
+        key_states = key_states.transpose(1, 2)
+        value_states = value_states.transpose(1, 2)
+
+        attn_dropout = self.attention_dropout if self.training else 0.0
+
+        # In PEFT, usually we cast the layer norms in float32 for training stability reasons
+        # therefore the input hidden states gets silently casted in float32. Hence, we need
+        # cast them back in the correct dtype just to be sure everything works as expected.
+        # This might slowdown training & inference so it is recommended to not cast the LayerNorms
+        # in fp32.
+
+        if query_states.dtype == torch.float32:
+            if torch.is_autocast_enabled():
+                target_dtype = torch.get_autocast_gpu_dtype()
+            # Handle the case where the model is quantized
+            elif hasattr(self.config, "_pre_quantization_dtype"):
+                target_dtype = self.config._pre_quantization_dtype
+            else:
+                target_dtype = self.q_proj.weight.dtype
+
+            logger.warning_once(
+                f"The input hidden states seems to be silently casted in float32, this might be related to"
+                f" the fact you have upcasted embedding or layer norm layers in float32. We will cast back the input in"
+                f" {target_dtype}."
+            )
+
+            query_states = query_states.to(target_dtype)
+            key_states = key_states.to(target_dtype)
+            value_states = value_states.to(target_dtype)
+
+        attn_output = self._flash_attention_forward(
+            query_states, key_states, value_states, attention_mask, q_len, dropout=attn_dropout, softmax_scale=None
+        )
+
+        attn_output = attn_output.reshape(bsz, q_len, self.hidden_size).contiguous()
+        attn_output = self.dense(attn_output)
+
+        if not output_attentions:
+            attn_weights = None
+
+        return attn_output, attn_weights, past_key_value
+
+    # Copied from transformers.models.llama.modeling_llama.LlamaFlashAttention2._flash_attention_forward
+    def _flash_attention_forward(
+            self, query_states, key_states, value_states, attention_mask, query_length, dropout=0.0, softmax_scale=None
+    ):
+        """
+        Calls the forward method of Flash Attention - if the input hidden states contain at least one padding token
+        first unpad the input, then computes the attention scores and pad the final attention scores.
+        Args:
+            query_states (`torch.Tensor`):
+                Input query states to be passed to Flash Attention API
+            key_states (`torch.Tensor`):
+                Input key states to be passed to Flash Attention API
+            value_states (`torch.Tensor`):
+                Input value states to be passed to Flash Attention API
+            attention_mask (`torch.Tensor`):
+                The padding mask - corresponds to a tensor of size `(batch_size, seq_len)` where 0 stands for the
+                position of padding tokens and 1 for the position of non-padding tokens.
+            dropout (`int`, *optional*):
+                Attention dropout
+            softmax_scale (`float`, *optional*):
+                The scaling of QK^T before applying softmax. Default to 1 / sqrt(head_dim)
+        """
+        if not self._flash_attn_uses_top_left_mask:
+            causal = self.is_causal
+        else:
+            # TODO: Remove the `query_length != 1` check once Flash Attention for RoCm is bumped to 2.1. For details, please see the comment in LlamaFlashAttention2 __init__.
+            causal = self.is_causal and query_length != 1
+
+        # Contains at least one padding token in the sequence
+        if attention_mask is not None:
+            batch_size = query_states.shape[0]
+            query_states, key_states, value_states, indices_q, cu_seq_lens, max_seq_lens = self._upad_input(
+                query_states, key_states, value_states, attention_mask, query_length
+            )
+
+            cu_seqlens_q, cu_seqlens_k = cu_seq_lens
+            max_seqlen_in_batch_q, max_seqlen_in_batch_k = max_seq_lens
+
+            attn_output_unpad = flash_attn_varlen_func(
+                query_states,
+                key_states,
+                value_states,
+                cu_seqlens_q=cu_seqlens_q,
+                cu_seqlens_k=cu_seqlens_k,
+                max_seqlen_q=max_seqlen_in_batch_q,
+                max_seqlen_k=max_seqlen_in_batch_k,
+                dropout_p=dropout,
+                softmax_scale=softmax_scale,
+                causal=causal,
+            )
+
+            attn_output = pad_input(attn_output_unpad, indices_q, batch_size, query_length)
+        else:
+            attn_output = flash_attn_func(
+                query_states, key_states, value_states, dropout, softmax_scale=softmax_scale, causal=causal
+            )
+
+        return attn_output
+
+    # Copied from transformers.models.llama.modeling_llama.LlamaFlashAttention2._upad_input
+    def _upad_input(self, query_layer, key_layer, value_layer, attention_mask, query_length):
+        indices_k, cu_seqlens_k, max_seqlen_in_batch_k = _get_unpad_data(attention_mask)
+        batch_size, kv_seq_len, num_key_value_heads, head_dim = key_layer.shape
+
+        key_layer = index_first_axis(
+            key_layer.reshape(batch_size * kv_seq_len, num_key_value_heads, head_dim), indices_k
+        )
+        value_layer = index_first_axis(
+            value_layer.reshape(batch_size * kv_seq_len, num_key_value_heads, head_dim), indices_k
+        )
+        if query_length == kv_seq_len:
+            query_layer = index_first_axis(
+                query_layer.reshape(batch_size * kv_seq_len, self.num_heads, head_dim), indices_k
+            )
+            cu_seqlens_q = cu_seqlens_k
+            max_seqlen_in_batch_q = max_seqlen_in_batch_k
+            indices_q = indices_k
+        elif query_length == 1:
+            max_seqlen_in_batch_q = 1
+            cu_seqlens_q = torch.arange(
+                batch_size + 1, dtype=torch.int32, device=query_layer.device
+            )  # There is a memcpy here, that is very bad.
+            indices_q = cu_seqlens_q[:-1]
+            query_layer = query_layer.squeeze(1)
+        else:
+            # The -q_len: slice assumes left padding.
+            attention_mask = attention_mask[:, -query_length:]
+            query_layer, indices_q, cu_seqlens_q, max_seqlen_in_batch_q = unpad_input(query_layer, attention_mask)
+
+        return (
+            query_layer,
+            key_layer,
+            value_layer,
+            indices_q,
+            (cu_seqlens_q, cu_seqlens_k),
+            (max_seqlen_in_batch_q, max_seqlen_in_batch_k),
+        )
+
+
+PHI_ATTENTION_CLASSES = {
+    "eager": PhiAttention,
+    "flash_attention_2": PhiFlashAttention2,
+}
+
+
+class PhiDecoderLayer(nn.Module):
+    def __init__(self, config: CheXagentConfig, layer_idx: int):
+        super().__init__()
+        self.self_attn = PHI_ATTENTION_CLASSES[config._attn_implementation](config, layer_idx=layer_idx)
+        self.mlp = PhiMLP(config)
+        self.input_layernorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
+        self.resid_dropout = nn.Dropout(config.resid_pdrop)
+
+    def forward(
+            self,
+            hidden_states: torch.Tensor,
+            attention_mask: Optional[torch.Tensor] = None,
+            position_ids: Optional[torch.LongTensor] = None,
+            output_attentions: Optional[bool] = False,
+            use_cache: Optional[bool] = False,
+            past_key_value: Optional[Tuple[torch.Tensor]] = None,
+    ) -> Tuple[torch.FloatTensor, Optional[Tuple[torch.FloatTensor, torch.FloatTensor]]]:
+        """
+        Args:
+            hidden_states (`torch.FloatTensor`):
+                input to the layer of shape `(batch, seq_len, embed_dim)`
+            attention_mask (`torch.FloatTensor`, *optional*): attention mask of size
+                `(batch, 1, tgt_len, src_len)` where padding elements are indicated by very large negative values.
+            position_ids (`torch.LongTensor` of shape `({0})`, *optional*):
+                Indices of positions of each input sequence tokens in the position embeddings. Selected in the range
+                `[0, config.n_positions - 1]`. [What are position IDs?](../glossary#position-ids)
+            output_attentions (`bool`, *optional*):
+                Whether or not to return the attentions tensors of all attention layers. See `attentions` under
+                returned tensors for more detail.
+            use_cache (`bool`, *optional*):
+                If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding
+                (see `past_key_values`).
+            past_key_value (`Tuple(torch.FloatTensor)`, *optional*): cached past key and value projection states
+        """
+
+        residual = hidden_states
+
+        hidden_states = self.input_layernorm(hidden_states)
+
+        # Self Attention
+        attn_outputs, self_attn_weights, present_key_value = self.self_attn(
+            hidden_states=hidden_states,
+            attention_mask=attention_mask,
+            position_ids=position_ids,
+            past_key_value=past_key_value,
+            output_attentions=output_attentions,
+            use_cache=use_cache,
+        )
+        attn_outputs = self.resid_dropout(attn_outputs)
+
+        feed_forward_hidden_states = self.resid_dropout(self.mlp(hidden_states))
+        hidden_states = attn_outputs + feed_forward_hidden_states + residual
+        outputs = (hidden_states,)
+
+        if output_attentions:
+            outputs += (self_attn_weights,)
+
+        if use_cache:
+            outputs += (present_key_value,)
+
+        return outputs
+
+
+PHI_START_DOCSTRING = r"""
+    This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
+    library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
+    etc.)
+    This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
+    Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
+    and behavior.
+    Parameters:
+        config ([`CheXagentConfig`]):
+            Model configuration class with all the parameters of the model. Initializing with a config file does not
+            load the weights associated with the model, only the configuration. Check out the
+            [`~PreTrainedModel.from_pretrained`] method to load the model weights.
+"""
+
+
+@add_start_docstrings(
+    "The bare Phi Model outputting raw hidden-states without any specific head on top.",
+    PHI_START_DOCSTRING,
+)
+class PhiPreTrainedModel(PreTrainedModel):
+    config_class = CheXagentConfig
+    base_model_prefix = "model"
+    supports_gradient_checkpointing = True
+    _no_split_modules = ["PhiDecoderLayer"]
+    _skip_keys_device_placement = "past_key_values"
+    _supports_flash_attn_2 = True
+    _supports_cache_class = True
+
+    def _init_weights(self, module):
+        std = self.config.initializer_range
+        if isinstance(module, nn.Linear):
+            module.weight.data.normal_(mean=0.0, std=std)
+            if module.bias is not None:
+                module.bias.data.zero_()
+        elif isinstance(module, nn.Embedding):
+            module.weight.data.normal_(mean=0.0, std=std)
+            if module.padding_idx is not None:
+                module.weight.data[module.padding_idx].zero_()
+
+
+PHI_INPUTS_DOCSTRING = r"""
+    Args:
+        input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
+            Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
+            it.
+            Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
+            [`PreTrainedTokenizer.__call__`] for details.
+            [What are input IDs?](../glossary#input-ids)
+        attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
+            Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
+            - 1 for tokens that are **not masked**,
+            - 0 for tokens that are **masked**.
+            [What are attention masks?](../glossary#attention-mask)
+            Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
+            [`PreTrainedTokenizer.__call__`] for details.
+            If `past_key_values` is used, optionally only the last `input_ids` have to be input (see
+            `past_key_values`).
+            If you want to change padding behavior, you should read [`modeling_opt._prepare_decoder_attention_mask`]
+            and modify to your needs. See diagram 1 in [the paper](https://arxiv.org/abs/1910.13461) for more
+            information on the default strategy.
+            - 1 indicates the head is **not masked**,
+            - 0 indicates the head is **masked**.
+        position_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
+            Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
+            config.n_positions - 1]`.
+            [What are position IDs?](../glossary#position-ids)
+        past_key_values (`Cache` or `tuple(tuple(torch.FloatTensor))`, *optional*):
+            Pre-computed hidden-states (key and values in the self-attention blocks and in the cross-attention
+            blocks) that can be used to speed up sequential decoding. This typically consists in the `past_key_values`
+            returned by the model at a previous stage of decoding, when `use_cache=True` or `config.use_cache=True`.
+            Two formats are allowed:
+            - a [`~cache_utils.Cache`] instance;
+            - Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of
+            shape `(batch_size, num_heads, sequence_length, embed_size_per_head)`). This is also known as the legacy
+            cache format.
+            The model will output the same cache format that is fed as input. If no `past_key_values` are passed, the
+            legacy cache format will be returned.
+            If `past_key_values` are used, the user can optionally input only the last `input_ids` (those that don't
+            have their past key value states given to this model) of shape `(batch_size, 1)` instead of all `input_ids`
+            of shape `(batch_size, sequence_length)`.
+        inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
+            Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
+            is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
+            model's internal embedding lookup matrix.
+        use_cache (`bool`, *optional*):
+            If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
+            `past_key_values`).
+        output_attentions (`bool`, *optional*):
+            Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
+            tensors for more detail.
+        output_hidden_states (`bool`, *optional*):
+            Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
+            more detail.
+        return_dict (`bool`, *optional*):
+            Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
+"""
+
+
+class CheXagentModel(PhiPreTrainedModel):
+    """
+    Transformer decoder consisting of *config.num_hidden_layers* layers. Each layer is a [`PhiDecoderLayer`]
+    Args:
+        config: CheXagentConfig
+    """
+
+    def __init__(self, config: CheXagentConfig):
+        super().__init__(config)
+        self.padding_idx = config.pad_token_id
+        self.vocab_size = config.vocab_size
+
+        self.embed_tokens = nn.Embedding(config.vocab_size, config.hidden_size, self.padding_idx)
+        self.embed_dropout = nn.Dropout(config.embd_pdrop)
+        self.layers = nn.ModuleList(
+            [PhiDecoderLayer(config, layer_idx) for layer_idx in range(config.num_hidden_layers)]
+        )
+        self.final_layernorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
+        self._use_flash_attention_2 = config._attn_implementation == "flash_attention_2"
+
+        self.gradient_checkpointing = False
+
+        # Initialize weights and apply final processing
+        self.post_init()
+
+        # IMAGE
+        self.tokenizer = CheXagentTokenizer.from_pretrained(config.name_or_path)
+        # self.visual = VisionEnsembleModel(**config.visual)
+        self.visual = CLIPModel(**config.visual)
+        # self.visual = DINOv2Model(**config.visual)
+
+    def get_input_embeddings(self):
+        return self.embed_tokens
+
+    def set_input_embeddings(self, value):
+        self.embed_tokens = value
+
+    @add_start_docstrings_to_model_forward(PHI_INPUTS_DOCSTRING)
+    def forward(
+            self,
+            input_ids: torch.LongTensor = None,
+            attention_mask: Optional[torch.Tensor] = None,
+            position_ids: Optional[torch.LongTensor] = None,
+            past_key_values: Optional[List[torch.FloatTensor]] = None,
+            inputs_embeds: Optional[torch.FloatTensor] = None,
+            use_cache: Optional[bool] = None,
+            output_attentions: Optional[bool] = None,
+            output_hidden_states: Optional[bool] = None,
+            return_dict: Optional[bool] = None,
+    ) -> Union[Tuple, BaseModelOutputWithPast]:
+        # IMAGE: encode images
+        if past_key_values is None and torch.any(input_ids == self.tokenizer.img_start_id):
+            bos_pos = torch.where(input_ids == self.tokenizer.img_start_id)
+            eos_pos = torch.where(input_ids == self.tokenizer.img_end_id)
+            assert (bos_pos[0] == eos_pos[0]).all()
+            img_pos = torch.stack((bos_pos[0], bos_pos[1], eos_pos[1]), dim=1)
+            image_paths = []
+            for i, a, b in img_pos:
+                image = input_ids[i][a + 1: b - 1].tolist()
+                image = image[: image.index(self.tokenizer.img_pad_id)]
+                image_paths.append(self.tokenizer.decode(image))
+            images = self.visual.encode(image_paths, training=self.training)
+            assert images.shape[0] == len(images)
+            fake_images = None
+        elif self.training:
+            fake_images = torch.zeros(1, 3, 512, 512).to(
+                dtype=next(self.visual.parameters()).dtype, device=next(self.visual.parameters()).device)
+            images = self.visual(fake_images)
+        else:
+            fake_images = None
+            images = None
+
+        # set constants
+        output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
+        output_hidden_states = (
+            output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
+        )
+        use_cache = use_cache if use_cache is not None else self.config.use_cache
+
+        return_dict = return_dict if return_dict is not None else self.config.use_return_dict
+
+        # IMAGE: retrieve input_ids and inputs_embeds
+        if input_ids is not None and inputs_embeds is not None:
+            raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
+        elif input_ids is not None:
+            input_shape = input_ids.size()
+            batch_size, seq_length = input_ids.shape[:2]
+        elif inputs_embeds is not None:
+            input_shape = inputs_embeds.size()[:-1]
+            batch_size, seq_length = inputs_embeds.shape[:2]
+        else:
+            raise ValueError("You have to specify either input_ids or inputs_embeds")
+
+        past_key_values_length = 0
+
+        if self.gradient_checkpointing and self.training:
+            if use_cache:
+                logger.warning_once(
+                    "`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
+                )
+                use_cache = False
+
+        if use_cache:
+            use_legacy_cache = not isinstance(past_key_values, Cache)
+            if use_legacy_cache:
+                past_key_values = DynamicCache.from_legacy_cache(past_key_values)
+            past_key_values_length = past_key_values.get_usable_length(seq_length)
+
+        if position_ids is None:
+            device = input_ids.device if input_ids is not None else inputs_embeds.device
+            position_ids = torch.arange(
+                past_key_values_length, seq_length + past_key_values_length, dtype=torch.long, device=device
+            )
+            position_ids = position_ids.unsqueeze(0)
+
+        if inputs_embeds is None:
+            inputs_embeds = self.embed_tokens(input_ids)
+
+        inputs_embeds = self.embed_dropout(inputs_embeds)
+
+        # Attention mask.
+        if self._use_flash_attention_2:
+            # 2d mask is passed through the layers
+            attention_mask = attention_mask if (attention_mask is not None and 0 in attention_mask) else None
+        else:
+            # 4d mask is passed through the layers
+            attention_mask = _prepare_4d_causal_attention_mask(
+                attention_mask, (batch_size, seq_length), inputs_embeds, past_key_values_length
+            )
+
+        # IMAGE: embed positions
+        hidden_states = inputs_embeds.clone()
+        if fake_images is not None:
+            hidden_states = hidden_states + images.mean() * 0
+        elif images is not None:
+            for idx, (i, a, b) in enumerate(img_pos):
+                hidden_states[i][a + 1: b] = images[idx]
+        output_shape = input_shape + (hidden_states.size(-1),)
+
+        # decoder layers
+        all_hidden_states = () if output_hidden_states else None
+        all_self_attns = () if output_attentions else None
+        next_decoder_cache = None
+
+        for decoder_layer in self.layers:
+            if output_hidden_states:
+                all_hidden_states += (hidden_states,)
+
+            if self.gradient_checkpointing and self.training:
+                layer_outputs = self._gradient_checkpointing_func(
+                    decoder_layer.__call__,
+                    hidden_states,
+                    attention_mask,
+                    position_ids,
+                    past_key_values,
+                    output_attentions,
+                )
+            else:
+                layer_outputs = decoder_layer(
+                    hidden_states,
+                    attention_mask=attention_mask,
+                    position_ids=position_ids,
+                    past_key_value=past_key_values,
+                    output_attentions=output_attentions,
+                    use_cache=use_cache,
+                )
+
+            hidden_states = layer_outputs[0]
+
+            if use_cache:
+                next_decoder_cache = layer_outputs[2 if output_attentions else 1]
+
+            if output_attentions:
+                all_self_attns += (layer_outputs[1],)
+
+        hidden_states = self.final_layernorm(hidden_states)
+
+        # add hidden states from the last decoder layer
+        if output_hidden_states:
+            all_hidden_states += (hidden_states,)
+
+        next_cache = None
+        if use_cache:
+            next_cache = next_decoder_cache.to_legacy_cache() if use_legacy_cache else next_decoder_cache
+        if not return_dict:
+            return tuple(v for v in [hidden_states, next_cache, all_hidden_states, all_self_attns] if v is not None)
+        return BaseModelOutputWithPast(
+            last_hidden_state=hidden_states,
+            past_key_values=next_cache,
+            hidden_states=all_hidden_states,
+            attentions=all_self_attns,
+        )
+
+
+class CheXagentForCausalLM(PhiPreTrainedModel):
+    _tied_weights_keys = ["lm_head.weight"]
+
+    def __init__(self, config):
+        super().__init__(config)
+        self.model = CheXagentModel(config)
+        self.vocab_size = config.vocab_size
+        self.lm_head = nn.Linear(config.hidden_size, config.vocab_size, bias=True)
+
+        # Initialize weights and apply final processing
+        self.post_init()
+
+    # Copied from transformers.models.llama.modeling_llama.LlamaForCausalLM.get_input_embeddings
+    def get_input_embeddings(self):
+        return self.model.embed_tokens
+
+    # Copied from transformers.models.llama.modeling_llama.LlamaForCausalLM.set_input_embeddings
+    def set_input_embeddings(self, value):
+        self.model.embed_tokens = value
+
+    # Copied from transformers.models.llama.modeling_llama.LlamaForCausalLM.get_output_embeddings
+    def get_output_embeddings(self):
+        return self.lm_head
+
+    # Copied from transformers.models.llama.modeling_llama.LlamaForCausalLM.set_output_embeddings
+    def set_output_embeddings(self, new_embeddings):
+        self.lm_head = new_embeddings
+
+    # Copied from transformers.models.llama.modeling_llama.LlamaForCausalLM.set_decoder
+    def set_decoder(self, decoder):
+        self.model = decoder
+
+    # Copied from transformers.models.llama.modeling_llama.LlamaForCausalLM.get_decoder
+    def get_decoder(self):
+        return self.model
+
+    def forward(
+            self,
+            input_ids: torch.LongTensor = None,
+            attention_mask: Optional[torch.Tensor] = None,
+            position_ids: Optional[torch.LongTensor] = None,
+            past_key_values: Optional[List[torch.FloatTensor]] = None,
+            inputs_embeds: Optional[torch.FloatTensor] = None,
+            labels: Optional[torch.LongTensor] = None,
+            use_cache: Optional[bool] = None,
+            output_attentions: Optional[bool] = None,
+            output_hidden_states: Optional[bool] = None,
+            return_dict: Optional[bool] = None,
+    ) -> Union[Tuple, CausalLMOutputWithPast]:
+        output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
+        output_hidden_states = (
+            output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
+        )
+        return_dict = return_dict if return_dict is not None else self.config.use_return_dict
+
+        # decoder outputs consists of (dec_features, layer_state, dec_hidden, dec_attn)
+        outputs = self.model(
+            input_ids=input_ids,
+            attention_mask=attention_mask,
+            position_ids=position_ids,
+            past_key_values=past_key_values,
+            inputs_embeds=inputs_embeds,
+            use_cache=use_cache,
+            output_attentions=output_attentions,
+            output_hidden_states=output_hidden_states,
+            return_dict=return_dict,
+        )
+
+        hidden_states = outputs[0]
+        logits = self.lm_head(hidden_states)
+        logits = logits.float()
+
+        loss = None
+        if labels is not None:
+            # Shift so that tokens < n predict n
+            shift_logits = logits[..., :-1, :].contiguous()
+            shift_labels = labels[..., 1:].contiguous()
+            # Flatten the tokens
+            loss_fct = CrossEntropyLoss()
+            shift_logits = shift_logits.view(-1, self.config.vocab_size)
+            shift_labels = shift_labels.view(-1)
+            # Enable model parallelism
+            shift_labels = shift_labels.to(shift_logits.device)
+            loss = loss_fct(shift_logits, shift_labels)
+
+        if not return_dict:
+            output = (logits,) + outputs[1:]
+            return (loss,) + output if loss is not None else output
+
+        return CausalLMOutputWithPast(
+            loss=loss,
+            logits=logits,
+            past_key_values=outputs.past_key_values,
+            hidden_states=outputs.hidden_states,
+            attentions=outputs.attentions,
+        )
+
+    # Copied from transformers.models.llama.modeling_llama.LlamaForCausalLM.prepare_inputs_for_generation
+    def prepare_inputs_for_generation(
+            self, input_ids, past_key_values=None, attention_mask=None, inputs_embeds=None, **kwargs
+    ):
+        if past_key_values is not None:
+            if isinstance(past_key_values, Cache):
+                cache_length = past_key_values.get_seq_length()
+                past_length = past_key_values.seen_tokens
+                max_cache_length = past_key_values.get_max_length()
+            else:
+                cache_length = past_length = past_key_values[0][0].shape[2]
+                max_cache_length = None
+
+            # Keep only the unprocessed tokens:
+            # 1 - If the length of the attention_mask exceeds the length of input_ids, then we are in a setting where
+            # some of the inputs are exclusively passed as part of the cache (e.g. when passing input_embeds as
+            # input)
+            if attention_mask is not None and attention_mask.shape[1] > input_ids.shape[1]:
+                input_ids = input_ids[:, -(attention_mask.shape[1] - past_length):]
+            # 2 - If the past_length is smaller than input_ids', then input_ids holds all input tokens. We can discard
+            # input_ids based on the past_length.
+            elif past_length < input_ids.shape[1]:
+                input_ids = input_ids[:, past_length:]
+            # 3 - Otherwise (past_length >= input_ids.shape[1]), let's assume input_ids only has unprocessed tokens.
+
+            # If we are about to go beyond the maximum cache length, we need to crop the input attention mask.
+            if (
+                    max_cache_length is not None
+                    and attention_mask is not None
+                    and cache_length + input_ids.shape[1] > max_cache_length
+            ):
+                attention_mask = attention_mask[:, -max_cache_length:]
+
+        position_ids = kwargs.get("position_ids", None)
+        if attention_mask is not None and position_ids is None:
+            # create position_ids on the fly for batch generation
+            position_ids = attention_mask.long().cumsum(-1) - 1
+            position_ids.masked_fill_(attention_mask == 0, 1)
+            if past_key_values:
+                position_ids = position_ids[:, -input_ids.shape[1]:]
+
+        # if `inputs_embeds` are passed, we only want to use them in the 1st generation step
+        if inputs_embeds is not None and past_key_values is None:
+            model_inputs = {"inputs_embeds": inputs_embeds}
+        else:
+            model_inputs = {"input_ids": input_ids}
+
+        model_inputs.update(
+            {
+                "position_ids": position_ids,
+                "past_key_values": past_key_values,
+                "use_cache": kwargs.get("use_cache"),
+                "attention_mask": attention_mask,
+            }
+        )
+        return model_inputs
+
+    @staticmethod
+    # Copied from transformers.models.llama.modeling_llama.LlamaForCausalLM._reorder_cache
+    def _reorder_cache(past_key_values, beam_idx):
+        reordered_past = ()
+        for layer_past in past_key_values:
+            reordered_past += (
+                tuple(past_state.index_select(0, beam_idx.to(past_state.device)) for past_state in layer_past),
+            )
+        return reordered_past

modeling_visual.py

@@ -0,0 +1,322 @@
+import io
+import math
+import re
+from functools import partial
+from typing import List
+
+import albumentations as A
+import cv2
+import numpy as np
+import pyarrow as pa
+import requests
+import torch
+from PIL import Image
+from albumentations.pytorch import ToTensorV2
+from einops import rearrange
+from torch import nn
+from torch.nn import functional as F
+from torch.nn.init import trunc_normal_
+from torchvision import transforms
+from torchvision.transforms import InterpolationMode
+from transformers import AutoModel, AutoProcessor
+from transformers.activations import ACT2FN
+
+
+class TransformCXR(object):
+    def __init__(
+            self,
+            image_size=448,
+            mean=(0.48145466, 0.4578275, 0.40821073),
+            std=(0.26862954, 0.26130258, 0.27577711),
+            allow_shift=True,
+            training=True,
+            normalize=True
+    ):
+
+        resize_size = image_size
+        p_train = 0.5
+        shift_limit = (-0.0, 0.0)
+        scale_limit = (-0.1, -0.02)
+        rotate_limit = 5
+        scale = (0.00, 0.01)
+        brightness_limit = (-0.15, 0.15)
+        contrast_limit = (-0.05, 0.05)
+        pad_mode = cv2.BORDER_CONSTANT
+        pad_val = (0, 0, 0)
+
+        if training:
+            if allow_shift:
+                transform_list = [
+                    A.ShiftScaleRotate(
+                        shift_limit=shift_limit, scale_limit=scale_limit,
+                        rotate_limit=rotate_limit, border_mode=pad_mode, value=pad_val,
+                        p=p_train
+                    ),
+                    A.Perspective(
+                        scale=scale, pad_mode=pad_mode, pad_val=pad_val, p=p_train
+                    ),
+                    A.Resize(height=resize_size, width=resize_size, interpolation=cv2.INTER_CUBIC),
+                    A.RandomCrop(height=image_size, width=image_size),
+                    A.RandomBrightnessContrast(
+                        brightness_limit=brightness_limit, contrast_limit=contrast_limit,
+                        p=p_train
+                    )
+                ]
+            else:
+                transform_list = [
+                    A.Resize(height=image_size, width=image_size, interpolation=cv2.INTER_CUBIC),
+                    A.RandomBrightnessContrast(
+                        brightness_limit=brightness_limit, contrast_limit=contrast_limit,
+                        p=p_train
+                    )
+                ]
+        else:
+            transform_list = [
+                A.Resize(height=image_size, width=image_size, interpolation=cv2.INTER_CUBIC)
+            ]
+
+        if normalize:
+            transform_list += [A.Normalize(mean=mean, std=std), ToTensorV2(transpose_mask=True)]
+
+        self.transforms = A.Compose(transform_list)
+
+    def __call__(self, image):
+        image = np.array(image)
+        return self.transforms(image=image)['image']
+
+
+def get_abs_pos(abs_pos, tgt_size):
+    # abs_pos: L, C
+    # tgt_size: M
+    # return: M, C
+    src_size = int(math.sqrt(abs_pos.size(0)))
+    tgt_size = int(math.sqrt(tgt_size))
+    dtype = abs_pos.dtype
+
+    if src_size != tgt_size:
+        return F.interpolate(
+            abs_pos.float().reshape(1, src_size, src_size, -1).permute(0, 3, 1, 2),
+            size=(tgt_size, tgt_size),
+            mode="bicubic",
+            align_corners=False,
+        ).permute(0, 2, 3, 1).flatten(0, 2).to(dtype=dtype)
+    else:
+        return abs_pos
+
+
+def get_2d_sincos_pos_embed(embed_dim, grid_size, cls_token=False):
+    """
+    grid_size: int of the grid height and width
+    return:
+    pos_embed: [grid_size*grid_size, embed_dim] or [1+grid_size*grid_size, embed_dim] (w/ or w/o cls_token)
+    """
+    grid_h = np.arange(grid_size, dtype=np.float32)
+    grid_w = np.arange(grid_size, dtype=np.float32)
+    grid = np.meshgrid(grid_w, grid_h)  # here w goes first
+    grid = np.stack(grid, axis=0)
+
+    grid = grid.reshape([2, 1, grid_size, grid_size])
+    pos_embed = get_2d_sincos_pos_embed_from_grid(embed_dim, grid)
+    if cls_token:
+        pos_embed = np.concatenate([np.zeros([1, embed_dim]), pos_embed], axis=0)
+    return pos_embed
+
+
+def get_2d_sincos_pos_embed_from_grid(embed_dim, grid):
+    assert embed_dim % 2 == 0
+
+    # use half of dimensions to encode grid_h
+    emb_h = get_1d_sincos_pos_embed_from_grid(embed_dim // 2, grid[0])  # (H*W, D/2)
+    emb_w = get_1d_sincos_pos_embed_from_grid(embed_dim // 2, grid[1])  # (H*W, D/2)
+
+    emb = np.concatenate([emb_h, emb_w], axis=1)  # (H*W, D)
+    return emb
+
+
+def get_1d_sincos_pos_embed_from_grid(embed_dim, pos):
+    """
+    embed_dim: output dimension for each position
+    pos: a list of positions to be encoded: size (M,)
+    out: (M, D)
+    """
+    assert embed_dim % 2 == 0
+    omega = np.arange(embed_dim // 2, dtype=np.float32)
+    omega /= embed_dim / 2.
+    omega = 1. / 10000 ** omega  # (D/2,)
+
+    pos = pos.reshape(-1)  # (M,)
+    out = np.einsum('m,d->md', pos, omega)  # (M, D/2), outer product
+
+    emb_sin = np.sin(out)  # (M, D/2)
+    emb_cos = np.cos(out)  # (M, D/2)
+
+    emb = np.concatenate([emb_sin, emb_cos], axis=1)  # (M, D)
+    return emb
+
+
+class Resampler(nn.Module):
+    """
+    A 2D perceiver-resampler network with one cross attention layers by
+        (grid_size**2) learnable queries and 2d sincos pos_emb
+    Outputs:
+        A tensor with the shape of (grid_size**2, embed_dim)
+    """
+
+    def __init__(
+            self,
+            grid_size,
+            embed_dim,
+            num_heads,
+            kv_dim=None,
+            norm_layer=nn.LayerNorm
+    ):
+        super().__init__()
+        self.num_queries = grid_size ** 2
+        self.embed_dim = embed_dim
+        self.num_heads = num_heads
+
+        self.pos_embed = nn.Parameter(
+            torch.from_numpy(get_2d_sincos_pos_embed(embed_dim, grid_size)).float()
+        ).requires_grad_(False)
+
+        self.query = nn.Parameter(torch.zeros(self.num_queries, embed_dim))
+        # trunc_normal_(self.query, std=.02)
+
+        if kv_dim is not None and kv_dim != embed_dim:
+            self.kv_proj = nn.Linear(kv_dim, embed_dim, bias=False)
+        else:
+            self.kv_proj = nn.Identity()
+
+        self.attn = nn.MultiheadAttention(embed_dim, num_heads)
+        self.ln_q = norm_layer(embed_dim)
+        self.ln_kv = norm_layer(embed_dim)
+        # self.apply(self._init_weights)
+
+    def _init_weights(self, m):
+        if isinstance(m, nn.Linear):
+            trunc_normal_(m.weight, std=.02)
+            if isinstance(m, nn.Linear) and m.bias is not None:
+                nn.init.constant_(m.bias, 0)
+        elif isinstance(m, nn.LayerNorm):
+            nn.init.constant_(m.bias, 0)
+            nn.init.constant_(m.weight, 1.0)
+
+    def forward(self, x, attn_mask=None):
+
+        pos_embed = get_abs_pos(self.pos_embed, x.size(1))
+
+        x = self.kv_proj(x)
+        x = self.ln_kv(x).permute(1, 0, 2)
+
+        N = x.shape[1]
+        q = self.ln_q(self.query)
+        out = self.attn(
+            self._repeat(q, N) + self.pos_embed.unsqueeze(1),
+            x + pos_embed.unsqueeze(1),
+            x,
+            attn_mask=attn_mask
+        )[0]
+        return out.permute(1, 0, 2)
+
+    def _repeat(self, query, N: int):
+        return query.unsqueeze(1).repeat(1, N, 1)
+
+
+class CLIPModel(nn.Module):
+
+    def __init__(
+            self,
+            image_size: int,
+            n_queries: int = 256,
+            output_dim: int = 512,
+            vision_model_name_or_path: str = "StanfordAIMI/XraySigLIP__vit-l-16-siglip-384__webli",
+            **kwargs
+    ):
+        super().__init__()
+        # load model and processor
+        self.model = AutoModel.from_pretrained(vision_model_name_or_path).vision_model
+        self.processor = AutoProcessor.from_pretrained(vision_model_name_or_path).image_processor
+
+        # set constants
+        self.image_height, self.image_width = self.image_size = (image_size, image_size)
+        width = self.model.config.hidden_size
+        patch_height, patch_width = self.model.embeddings.patch_embedding.kernel_size
+        self.grid_size = (self.image_height // patch_height, self.image_width // patch_width)
+        self.output_dim = output_dim
+
+        # Transforms
+        self.mean = self.processor.image_mean
+        self.std = self.processor.image_std
+        self.image_transform_train = TransformCXR(image_size=image_size, mean=self.mean, std=self.std, training=True)
+        self.image_transform_train_no_shift = TransformCXR(
+            image_size=image_size, mean=self.mean, std=self.std, allow_shift=False, training=True
+        )
+        self.image_transform_val = TransformCXR(image_size=image_size, mean=self.mean, std=self.std, training=False)
+        self.image_transform = transforms.Compose([
+            transforms.Resize(
+                (image_size, image_size),
+                interpolation=InterpolationMode.BICUBIC
+            ),
+            transforms.ToTensor(),
+            transforms.Normalize(mean=self.mean, std=self.std),
+        ])
+
+        # MLP
+        self.pos_embed = nn.Parameter(
+            torch.from_numpy(get_2d_sincos_pos_embed(width, self.grid_size[0])).float()
+        ).requires_grad_(False)
+        self.attn_pool = nn.Sequential(
+            nn.Linear(width, output_dim * 4, bias=True),
+            ACT2FN["gelu"],
+            nn.Linear(output_dim * 4, output_dim, bias=True)
+        )
+        norm_layer = partial(nn.LayerNorm, eps=1e-6)
+        self.ln_post = norm_layer(output_dim)
+        self.proj = nn.Parameter((output_dim ** -0.5) * torch.randn(output_dim, output_dim), requires_grad=True)
+
+    def forward_resampler(self, x):
+        pos_embed = get_abs_pos(self.pos_embed, x.size(1))
+        x = x + pos_embed.unsqueeze(0)
+        x = self.attn_pool(x)
+        x = self.ln_post(x)
+        x = x @ self.proj
+        return x
+
+    def forward(self, x: torch.Tensor):
+        # get feature
+        x = self.model(x, output_hidden_states=True).hidden_states[-1]
+
+        # resampler
+        x = self.forward_resampler(x)
+        return x
+
+    def load_image(self, image_path, training):
+        if image_path.startswith("http://") or image_path.startswith("https://"):
+            image = Image.open(requests.get(image_path, stream=True).raw)
+        else:
+            image = Image.open(image_path)
+
+        image = image.convert("RGB")
+
+        no_shift = any([keyword in image_path for keyword in ["vindr", "candid", "siim", "object-cxr", "ms-cxr"]])
+        try:
+            if training or self.training:
+                if no_shift:
+                    image_tensor = self.image_transform_train_no_shift(image)
+                else:
+                    image_tensor = self.image_transform_train(image)
+            else:
+                image_tensor = self.image_transform_val(image)
+        except:
+            image_tensor = self.image_transform(image)
+        return image_tensor
+
+    def encode(self, image_paths: List[str], training):
+        images = []
+        for image_path in image_paths:
+            image = self.load_image(image_path, training)
+            images.append(image)
+        images = torch.stack(images, dim=0)
+        images = images.to(dtype=next(self.parameters()).dtype, device=next(self.parameters()).device)
+        outputs = self.forward(images)
+        return outputs

tokenization_chexagent.py

@@ -0,0 +1,675 @@
+import json
+from functools import lru_cache
+from typing import TYPE_CHECKING
+
+import regex as re
+from transformers.tokenization_utils_base import TextInput
+from transformers.utils import is_tf_available, is_torch_available, to_py_obj
+
+if TYPE_CHECKING:
+    if is_torch_available():
+        import torch
+    if is_tf_available():
+        import tensorflow as tf
+
+import os
+import random
+from typing import Dict, List, Tuple, Union, Any, Callable, Optional
+
+import matplotlib as mpl
+import matplotlib.colors as mcolors
+import matplotlib.colors as mplc
+import matplotlib.figure as mplfigure
+import numpy as np
+import requests
+import torch
+from PIL import Image
+from matplotlib.backends.backend_agg import FigureCanvasAgg
+from transformers import PreTrainedTokenizer, AddedToken
+from transformers.utils import logging
+
+logger = logging.get_logger(__name__)
+
+VOCAB_FILES_NAMES = {
+    "vocab_file": "vocab.json",
+    "merges_file": "merges.txt",
+}
+
+PRETRAINED_VOCAB_FILES_MAP = {
+    "vocab_file": {
+        "Salesforce/codegen-350M-mono": "https://huggingface.co/Salesforce/codegen-350M-mono/resolve/main/vocab.json",
+    },
+    "merges_file": {
+        "Salesforce/codegen-350M-mono": "https://huggingface.co/Salesforce/codegen-350M-mono/resolve/main/merges.txt",
+    },
+}
+
+PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {
+    "Salesforce/codegen-350M-mono": 2048,
+}
+
+IMG_TOKEN_SPAN = 1024
+
+DEFAULT_CHAT_TEMPLATE = "{% for message in messages %}\n{% if message['from'] == 'human' %}\n{{ '<|user|>\n' + message['value'] + eos_token }}\n{% elif message['from'] == 'system' %}\n{{ '<|system|>\n' + message['value'] + eos_token }}\n{% elif message['from'] == 'gpt' %}\n{{ '<|assistant|>\n'  + message['value'] + eos_token }}\n{% endif %}\n{% if loop.last and add_generation_prompt %}\n{{ '<|assistant|>' }}\n{% endif %}\n{% endfor %}"
+
+
+@lru_cache()
+def bytes_to_unicode():
+    """
+    Returns list of utf-8 byte and a mapping to unicode strings. We specifically avoids mapping to whitespace/control
+    characters the bpe code barfs on.
+
+    The reversible bpe codes work on unicode strings. This means you need a large # of unicode characters in your vocab
+    if you want to avoid UNKs. When you're at something like a 10B token dataset you end up needing around 5K for
+    decent coverage. This is a significant percentage of your normal, say, 32K bpe vocab. To avoid that, we want lookup
+    tables between utf-8 bytes and unicode strings.
+    """
+    bs = (
+            list(range(ord("!"), ord("~") + 1)) + list(range(ord("¡"), ord("¬") + 1)) + list(
+        range(ord("®"), ord("ÿ") + 1))
+    )
+    cs = bs[:]
+    n = 0
+    for b in range(2 ** 8):
+        if b not in bs:
+            bs.append(b)
+            cs.append(2 ** 8 + n)
+            n += 1
+    cs = [chr(n) for n in cs]
+    return dict(zip(bs, cs))
+
+
+def get_pairs(word):
+    """
+    Return set of symbol pairs in a word.
+
+    Word is represented as tuple of symbols (symbols being variable-length strings).
+    """
+    pairs = set()
+    prev_char = word[0]
+    for char in word[1:]:
+        pairs.add((prev_char, char))
+        prev_char = char
+    return pairs
+
+
+def _list_find(
+        input_list: List[Any],
+        candidates: Tuple[Any],
+        start: int = 0,
+):
+    for i in range(start, len(input_list)):
+        if input_list[i] in candidates:
+            return i
+    return -1
+
+
+def _replace_closed_tag(
+        input_tokens: List[Any],
+        start_tags: Union[Any, Tuple[Any]],
+        end_tags: Union[Any, Tuple[Any]],
+        inclusive_replace_func: Callable,
+        exclusive_replace_func: Callable = lambda x: x,
+):
+    if isinstance(start_tags, (str, int)):
+        start_tags = (start_tags,)
+    if isinstance(end_tags, (str, int)):
+        end_tags = (end_tags,)
+    assert len(start_tags) == len(end_tags)
+
+    output_tokens = []
+    end = 0
+    while True:
+        start = _list_find(input_tokens, start_tags, end)
+        if start == -1:
+            break
+        output_tokens.extend(exclusive_replace_func(input_tokens[end: start]))
+        tag_idx = start_tags.index(input_tokens[start])
+        end = _list_find(input_tokens, (end_tags[tag_idx],), start)
+        if end == -1:
+            raise ValueError("Unclosed image token")
+        output_tokens.extend(inclusive_replace_func(input_tokens[start: end + 1]))
+        end += 1
+    output_tokens.extend(exclusive_replace_func(input_tokens[end:]))
+    return output_tokens
+
+
+class CheXagentTokenizer(PreTrainedTokenizer):
+    vocab_files_names = VOCAB_FILES_NAMES
+    pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
+    max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
+    model_input_names = ["input_ids", "attention_mask"]
+
+    def __init__(
+            self,
+            vocab_file,
+            merges_file,
+            errors="replace",
+            unk_token="<|endoftext|>",
+            bos_token="<|endoftext|>",
+            eos_token="<|endoftext|>",
+            pad_token=None,
+            add_prefix_space=False,
+            add_bos_token=False,
+            image_start_tag='<|img|>',
+            image_end_tag='<|/img|>',
+            image_pad_tag='<|imgpad|>',
+            ref_start_tag='<|ref|>',
+            ref_end_tag='<|/ref|>',
+            box_start_tag='<|box|>',
+            box_end_tag='<|/box|>',
+            quad_start_tag='<|quad|>',
+            quad_end_tag='<|/quad|>',
+            **kwargs,
+    ):
+        bos_token = AddedToken(bos_token, special=True) if isinstance(bos_token, str) else bos_token
+        eos_token = AddedToken(eos_token, special=True) if isinstance(eos_token, str) else eos_token
+        unk_token = AddedToken(unk_token, special=True) if isinstance(unk_token, str) else unk_token
+        pad_token = AddedToken(pad_token, special=True) if isinstance(pad_token, str) else pad_token
+        self.add_bos_token = add_bos_token
+
+        with open(vocab_file, encoding="utf-8") as vocab_handle:
+            self.encoder = json.load(vocab_handle)
+        self.decoder = {v: k for k, v in self.encoder.items()}
+        self.errors = errors  # how to handle errors in decoding
+        self.byte_encoder = bytes_to_unicode()
+        self.byte_decoder = {v: k for k, v in self.byte_encoder.items()}
+        with open(merges_file, encoding="utf-8") as merges_handle:
+            bpe_merges = merges_handle.read().split("\n")[1:-1]
+        bpe_merges = [tuple(merge.split()) for merge in bpe_merges]
+        self.bpe_ranks = dict(zip(bpe_merges, range(len(bpe_merges))))
+        self.cache = {}
+        self.add_prefix_space = add_prefix_space
+
+        # Should have added re.IGNORECASE so BPE merges can happen for capitalized versions of contractions
+        self.pat = re.compile(r"""'s|'t|'re|'ve|'m|'ll|'d| ?\p{L}+| ?\p{N}+| ?[^\s\p{L}\p{N}]+|\s+(?!\S)|\s+""")
+        super().__init__(
+            errors=errors,
+            unk_token=unk_token,
+            bos_token=bos_token,
+            eos_token=eos_token,
+            pad_token=pad_token,
+            add_prefix_space=add_prefix_space,
+            add_bos_token=add_bos_token,
+            **kwargs,
+        )
+
+        self.image_start_tag = image_start_tag
+        self.image_end_tag = image_end_tag
+        self.image_pad_tag = image_pad_tag
+        self.ref_start_tag = ref_start_tag
+        self.ref_end_tag = ref_end_tag
+        self.box_start_tag = box_start_tag
+        self.box_end_tag = box_end_tag
+        self.quad_start_tag = quad_start_tag
+        self.quad_end_tag = quad_end_tag
+        self.IMAGE_ST = (
+            image_start_tag, image_end_tag, image_pad_tag,
+            ref_start_tag, ref_end_tag, box_start_tag, box_end_tag,
+            quad_start_tag, quad_end_tag,
+        )
+        for special_token in self.IMAGE_ST:
+            if special_token not in self.get_vocab():
+                self.add_special_tokens({"additional_special_tokens": [special_token]})
+        for coordinate in range(10):
+            if f"<{coordinate}>" not in self.get_vocab():
+                self.add_special_tokens({"additional_special_tokens": [f"<|coord_{coordinate}|>"]})
+        if len(self) % 64 != 0:
+            for extra in range(((len(self) // 64) + 1) * 64 - len(self)):
+                if f"<extra_{extra}>" not in self.get_vocab():
+                    self.add_special_tokens({"additional_special_tokens": [f"<|extra_{extra}|>"]})
+        self.img_start_id = self.convert_tokens_to_ids(self.image_start_tag)
+        self.img_end_id = self.convert_tokens_to_ids(self.image_end_tag)
+        self.img_pad_id = self.convert_tokens_to_ids(self.image_pad_tag)
+        self.ref_start_id = self.convert_tokens_to_ids(self.ref_start_tag)
+        self.ref_end_id = self.convert_tokens_to_ids(self.ref_end_tag)
+        self.box_start_id = self.convert_tokens_to_ids(self.box_start_tag)
+        self.box_end_id = self.convert_tokens_to_ids(self.box_end_tag)
+        self.quad_start_id = self.convert_tokens_to_ids(self.quad_start_tag)
+        self.quad_end_id = self.convert_tokens_to_ids(self.quad_end_tag)
+        self.chat_template = DEFAULT_CHAT_TEMPLATE
+
+    @property
+    def vocab_size(self):
+        return len(self.encoder)
+
+    def get_vocab(self):
+        return dict(self.encoder, **self.added_tokens_encoder)
+
+    def bpe(self, token):
+        if token in self.cache:
+            return self.cache[token]
+        word = tuple(token)
+        pairs = get_pairs(word)
+
+        if not pairs:
+            return token
+
+        while True:
+            bigram = min(pairs, key=lambda pair: self.bpe_ranks.get(pair, float("inf")))
+            if bigram not in self.bpe_ranks:
+                break
+            first, second = bigram
+            new_word = []
+            i = 0
+            while i < len(word):
+                try:
+                    j = word.index(first, i)
+                except ValueError:
+                    new_word.extend(word[i:])
+                    break
+                else:
+                    new_word.extend(word[i:j])
+                    i = j
+
+                if word[i] == first and i < len(word) - 1 and word[i + 1] == second:
+                    new_word.append(first + second)
+                    i += 2
+                else:
+                    new_word.append(word[i])
+                    i += 1
+            new_word = tuple(new_word)
+            word = new_word
+            if len(word) == 1:
+                break
+            else:
+                pairs = get_pairs(word)
+        word = " ".join(word)
+        self.cache[token] = word
+        return word
+
+    def build_inputs_with_special_tokens(self, token_ids_0, token_ids_1=None):
+        if self.add_bos_token:
+            bos_token_ids = [self.bos_token_id]
+        else:
+            bos_token_ids = []
+
+        output = bos_token_ids + token_ids_0
+
+        if token_ids_1 is None:
+            return output
+
+        return output + bos_token_ids + token_ids_1
+
+    def tokenize(self, text: TextInput, **kwargs) -> List[str]:
+        def _encode_imgurl(img_tokens):
+            assert img_tokens[0] == self.image_start_tag and img_tokens[-1] == self.image_end_tag
+            img_tokens = img_tokens[1:-1]
+            img_url = ''.join(img_tokens)
+            out_img_tokens = list(img_url)
+            if len(out_img_tokens) > IMG_TOKEN_SPAN:
+                raise ValueError("The content in {}..{} is too long".format(self.image_start_tag, self.image_end_tag))
+            out_img_tokens.extend([self.image_pad_tag] * (IMG_TOKEN_SPAN - len(out_img_tokens)))
+            out_img_tokens = [self.image_start_tag] + out_img_tokens + [self.image_end_tag]
+            return out_img_tokens
+
+        tokens = super().tokenize(text, **kwargs)
+        tokens = _replace_closed_tag(tokens, self.image_start_tag, self.image_end_tag, _encode_imgurl)
+        return tokens
+
+    def _tokenize(self, text):
+        """Tokenize a string."""
+
+        bpe_tokens = []
+        for token in re.findall(self.pat, text):
+            token = "".join(
+                self.byte_encoder[b] for b in token.encode("utf-8")
+            )  # Maps all our bytes to unicode strings, avoiding control tokens of the BPE (spaces in our case)
+            bpe_tokens.extend(bpe_token for bpe_token in self.bpe(token).split(" "))
+        return bpe_tokens
+
+    def _convert_token_to_id(self, token):
+        """Converts a token (str) in an id using the vocab."""
+        return self.encoder.get(token, self.encoder.get(self.unk_token))
+
+    def _convert_id_to_token(self, index):
+        """Converts an index (integer) in a token (str) using the vocab."""
+        return self.decoder.get(index)
+
+    def convert_tokens_to_string(self, tokens):
+        """Converts a sequence of tokens (string) in a single string."""
+        text = "".join(tokens)
+        text = bytearray([self.byte_decoder[c] for c in text]).decode("utf-8", errors=self.errors)
+        return text
+
+    def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
+        if not os.path.isdir(save_directory):
+            logger.error(f"Vocabulary path ({save_directory}) should be a directory")
+            return
+        vocab_file = os.path.join(
+            save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
+        )
+        merge_file = os.path.join(
+            save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["merges_file"]
+        )
+
+        with open(vocab_file, "w", encoding="utf-8") as f:
+            f.write(json.dumps(self.encoder, indent=2, sort_keys=True, ensure_ascii=False) + "\n")
+
+        index = 0
+        with open(merge_file, "w", encoding="utf-8") as writer:
+            writer.write("#version: 0.2\n")
+            for bpe_tokens, token_index in sorted(self.bpe_ranks.items(), key=lambda kv: kv[1]):
+                if index != token_index:
+                    logger.warning(
+                        f"Saving vocabulary to {merge_file}: BPE merge indices are not consecutive."
+                        " Please check that the tokenizer is not corrupted!"
+                    )
+                    index = token_index
+                writer.write(" ".join(bpe_tokens) + "\n")
+                index += 1
+
+        return vocab_file, merge_file
+
+    def prepare_for_tokenization(self, text, is_split_into_words=False, **kwargs):
+        add_prefix_space = kwargs.pop("add_prefix_space", self.add_prefix_space)
+        if is_split_into_words or add_prefix_space:
+            text = " " + text
+        return (text, kwargs)
+
+    def decode(
+            self,
+            token_ids: Union[int, List[int], "np.ndarray", "torch.Tensor", "tf.Tensor"],
+            skip_special_tokens: bool = False,
+            clean_up_tokenization_spaces: bool = None,
+            truncate_before_pattern: Optional[List[str]] = None,
+            **kwargs,
+    ) -> str:
+        """
+        Converts a sequence of ids in a string, using the tokenizer and vocabulary with options to remove special
+        tokens and clean up tokenization spaces.
+
+        Similar to doing `self.convert_tokens_to_string(self.convert_ids_to_tokens(token_ids))`.
+
+        Args:
+            token_ids (`Union[int, List[int], np.ndarray, torch.Tensor, tf.Tensor]`):
+                List of tokenized input ids. Can be obtained using the `__call__` method.
+            skip_special_tokens (`bool`, *optional*, defaults to `False`):
+                Whether or not to remove special tokens in the decoding.
+            clean_up_tokenization_spaces (`bool`, *optional*):
+                Whether or not to clean up the tokenization spaces. If `None`, will default to
+                `self.clean_up_tokenization_spaces` (available in the `tokenizer_config`).
+            truncate_before_pattern (`List[str]`, *optional*, defaults to `None`):
+                A list of regular expression strings that will be used to truncate the returned string. This can be
+                used to remove extra pieces of code (e.g. truncate if observing a comment symbol "#" at the beginning
+                of a new line). An example pattern could be `["^#", re.escape("<|endoftext|>"), "^'''", "\n\n\n"]`.
+            kwargs (additional keyword arguments, *optional*):
+                Will be passed to the underlying model specific decode method.
+
+        Returns:
+            `str`: The decoded sentence.
+        """
+
+        token_ids = to_py_obj(token_ids)
+
+        decoded_text = self._decode(
+            token_ids=token_ids,
+            skip_special_tokens=skip_special_tokens,
+            clean_up_tokenization_spaces=clean_up_tokenization_spaces,
+            **kwargs,
+        )
+
+        if truncate_before_pattern is not None and len(truncate_before_pattern) > 0:
+            decoded_text = self.truncate(decoded_text, truncate_before_pattern)
+
+        return decoded_text
+
+    def _decode(
+            self,
+            token_ids: List[int],
+            skip_special_tokens: bool = False,
+            clean_up_tokenization_spaces: bool = None,
+            spaces_between_special_tokens: bool = True,
+            **kwargs,
+    ) -> str:
+
+        def _decode_imgurl(img_token_ids):
+            assert img_token_ids[0] == self.img_start_id and img_token_ids[-1] == self.img_end_id
+            img_token_ids = img_token_ids[1:-1]
+            img_token_ids = img_token_ids[: img_token_ids.index(self.img_pad_id)]
+            return [self.img_start_id] + img_token_ids + [self.img_end_id]
+
+        token_ids = _replace_closed_tag(token_ids, self.img_start_id, self.img_end_id, _decode_imgurl)
+
+        return super()._decode(
+            token_ids, skip_special_tokens, clean_up_tokenization_spaces, spaces_between_special_tokens, **kwargs
+        )
+
+    def truncate(self, completion, truncate_before_pattern):
+        def find_re(string, pattern, start_pos):
+            m = pattern.search(string, start_pos)
+            return m.start() if m else -1
+
+        terminals = [re.compile(pattern, re.MULTILINE) for pattern in truncate_before_pattern]
+
+        prints = list(re.finditer("^print", completion, re.MULTILINE))
+
+        if len(prints) > 1:
+            completion = completion[: prints[1].start()]
+
+        defs = list(re.finditer("^def", completion, re.MULTILINE))
+
+        if len(defs) > 1:
+            completion = completion[: defs[1].start()]
+
+        start_pos = 0
+
+        terminals_pos = [
+            pos for pos in [find_re(completion, terminal, start_pos) for terminal in terminals] if pos != -1
+        ]
+
+        if len(terminals_pos) > 0:
+            return completion[: min(terminals_pos)]
+        else:
+            return completion
+
+    def from_list_format(self, list_format: List[Dict]):
+        text = ''
+        num_images = 0
+        for ele in list_format:
+            if 'image' in ele:
+                num_images += 1
+                text += f'Picture {num_images}:'
+                text += self.image_start_tag + ele['image'] + self.image_end_tag
+                text += '\n'
+            elif 'text' in ele:
+                text += ele['text']
+            elif 'box' in ele:
+                if 'ref' in ele:
+                    text += self.ref_start_tag + ele['ref'] + self.ref_end_tag
+                for box in ele['box']:
+                    text += self.box_start_tag + '(%d,%d),(%d,%d)' % (box[0], box[1], box[2], box[3]) + self.box_end_tag
+            else:
+                raise ValueError("Unsupport element: " + str(ele))
+        return text
+
+    def to_list_format(self, text: str):
+        token_ids = self.encode(text)
+
+        def _encode_vl_info(tokens):
+            if len(tokens) == 0:
+                return []
+            if tokens[0] == self.img_start_id and tokens[-1] == self.img_end_id:
+                key = 'image'
+            elif tokens[0] == self.ref_start_id and tokens[-1] == self.ref_end_id:
+                key = 'ref'
+            elif tokens[0] == self.box_start_id and tokens[-1] == self.box_end_id:
+                key = 'box'
+            elif tokens[0] == self.quad_start_id and tokens[-1] == self.quad_end_id:
+                key = 'quad'
+            else:
+                val = self.decode(tokens)
+                return [{'text': val}]
+            tokens = [token for token in tokens[1:-1] if token != self.img_pad_id]
+            val = self.decode(tokens, skip_special_tokens=True)
+            return [{key: val}]
+
+        return _replace_closed_tag(
+            token_ids,
+            (self.img_start_id, self.ref_start_id, self.box_start_id, self.quad_start_id),
+            (self.img_end_id, self.ref_end_id, self.box_end_id, self.quad_end_id),
+            _encode_vl_info,
+            _encode_vl_info,
+        )
+
+    def _fetch_latest_picture(self, response, history):
+        if history is None:
+            history = []
+        _history = history + [(response, None)]
+        for q, r in _history[::-1]:
+            for ele in self.to_list_format(q)[::-1]:
+                if 'image' in ele:
+                    return ele['image']
+        return None
+
+    def _fetch_all_box_with_ref(self, text):
+        list_format = self.to_list_format(text)
+        output = []
+        for i, ele in enumerate(list_format):
+            if 'box' in ele:
+                bbox = tuple(map(int, ele['box'].replace('(', '').replace(')', '').split(',')))
+                assert len(bbox) == 4
+                output.append({'box': bbox})
+                if i > 0 and 'ref' in list_format[i - 1]:
+                    output[-1]['ref'] = list_format[i - 1]['ref'].strip()
+        return output
+
+    def draw_bbox_on_latest_picture(
+            self,
+            response,
+            history=None,
+    ) -> Optional[Image.Image]:
+        image = self._fetch_latest_picture(response, history)
+        if image is None:
+            return None
+        if image.startswith("http://") or image.startswith("https://"):
+            image = Image.open(requests.get(image, stream=True).raw).convert("RGB")
+            h, w = image.height, image.width
+        else:
+            image = np.asarray(Image.open(image).convert("RGB"))
+            h, w = image.shape[0], image.shape[1]
+        visualizer = Visualizer(image)
+
+        boxes = self._fetch_all_box_with_ref(response)
+        if not boxes:
+            return None
+        color = random.choice([_ for _ in mcolors.TABLEAU_COLORS.keys()])  # init color
+        for box in boxes:
+            if 'ref' in box:  # random new color for new refexps
+                color = random.choice([_ for _ in mcolors.TABLEAU_COLORS.keys()])
+            x1, y1, x2, y2 = box['box']
+            x1, y1, x2, y2 = (int(x1 / 1000 * w), int(y1 / 1000 * h), int(x2 / 1000 * w), int(y2 / 1000 * h))
+            visualizer.draw_box((x1, y1, x2, y2), alpha=1, edge_color=color)
+            if 'ref' in box:
+                visualizer.draw_text(box['ref'], (x1, y1), color=color, horizontal_alignment="left")
+        return visualizer.output
+
+
+class VisImage:
+    def __init__(self, img, scale=1.0):
+        self.img = img
+        self.scale = scale
+        self.width, self.height = img.shape[1], img.shape[0]
+        self._setup_figure(img)
+
+    def _setup_figure(self, img):
+        fig = mplfigure.Figure(frameon=False)
+        self.dpi = fig.get_dpi()
+        # add a small 1e-2 to avoid precision lost due to matplotlib's truncation
+        # (https://github.com/matplotlib/matplotlib/issues/15363)
+        fig.set_size_inches(
+            (self.width * self.scale + 1e-2) / self.dpi,
+            (self.height * self.scale + 1e-2) / self.dpi,
+        )
+        self.canvas = FigureCanvasAgg(fig)
+        # self.canvas = mpl.backends.backend_cairo.FigureCanvasCairo(fig)
+        ax = fig.add_axes([0.0, 0.0, 1.0, 1.0])
+        ax.axis("off")
+        self.fig = fig
+        self.ax = ax
+        self.reset_image(img)
+
+    def reset_image(self, img):
+        img = img.astype("uint8")
+        self.ax.imshow(img, extent=(0, self.width, self.height, 0), interpolation="nearest")
+
+    def save(self, filepath):
+        self.fig.savefig(filepath)
+
+    def get_image(self):
+        canvas = self.canvas
+        s, (width, height) = canvas.print_to_buffer()
+
+        buffer = np.frombuffer(s, dtype="uint8")
+
+        img_rgba = buffer.reshape(height, width, 4)
+        rgb, alpha = np.split(img_rgba, [3], axis=2)
+        return rgb.astype("uint8")
+
+
+class Visualizer:
+    def __init__(self, img_rgb, metadata=None, scale=1.0):
+        self.img = np.asarray(img_rgb).clip(0, 255).astype(np.uint8)
+        self.output = VisImage(self.img, scale=scale)
+        self.cpu_device = torch.device("cpu")
+
+        # too small texts are useless, therefore clamp to 14
+        self._default_font_size = max(
+            np.sqrt(self.output.height * self.output.width) // 30, 15 // scale
+        )
+
+    def draw_text(
+            self,
+            text,
+            position,
+            *,
+            font_size=None,
+            color="g",
+            horizontal_alignment="center",
+            rotation=0,
+    ):
+        if not font_size:
+            font_size = self._default_font_size
+
+        # since the text background is dark, we don't want the text to be dark
+        color = np.maximum(list(mplc.to_rgb(color)), 0.2)
+        color[np.argmax(color)] = max(0.8, np.max(color))
+
+        x, y = position
+        self.output.ax.text(
+            x,
+            y,
+            text,
+            size=font_size * self.output.scale,
+            bbox={"facecolor": "black", "alpha": 0.8, "pad": 0.7, "edgecolor": "none"},
+            verticalalignment="top",
+            horizontalalignment=horizontal_alignment,
+            color=color,
+            zorder=10,
+            rotation=rotation,
+        )
+        return self.output
+
+    def draw_box(self, box_coord, alpha=0.5, edge_color="g", line_style="-"):
+        x0, y0, x1, y1 = box_coord
+        width = x1 - x0
+        height = y1 - y0
+
+        linewidth = max(self._default_font_size / 4, 1)
+
+        self.output.ax.add_patch(
+            mpl.patches.Rectangle(
+                (x0, y0),
+                width,
+                height,
+                fill=False,
+                edgecolor=edge_color,
+                linewidth=linewidth * self.output.scale,
+                alpha=alpha,
+                linestyle=line_style,
+            )
+        )
+        return self.output
+
+    def get_output(self):
+        return self.output