--- library_name: scvi-tools license: cc-by-4.0 tags: - biology - genomics - single-cell - model_cls_name:SCPOLI - scvi_version:n/a - anndata_version:0.11.1 - modality:rna - annotated:False --- # Description HNOCA atlas # Model properties Many model properties are in the model tags. Some more are listed below. **model_init_params**: ```json { "hidden_layer_sizes": [ 1024 ], "latent_dim": 10, "dr_rate": 0.05, "use_mmd": false, "mmd_on": "z", "mmd_boundary": null, "recon_loss": "nb", "beta": 1, "use_bn": false, "use_ln": true, "embedding_dims": [ 5 ], "embedding_max_norm": 1.0, "inject_condition": [ "encoder", "decoder" ], "mean": null } ``` **model_setup_anndata_args**: ```json { "condition_keys": [ "batch" ], "cell_type_keys": [ "snapseed_pca_rss_level_1", "snapseed_pca_rss_level_12", "snapseed_pca_rss_level_123" ] } ``` **model_summary_stats**: | Summary Stat Key |  Value  | |------------------|---------| |  n_batch  |  396  | |  n_cells  | 1770578 | |  n_labels  |  28  | |  n_vars  |  3000  | **model_data_registry**: | Registry Key | scvi-tools Location | |--------------|---------------------| **model_parent_module**: scarches.model **data_is_minified**: True # Training data This is an optional link to where the training data is stored if it is too large to host on the huggingface Model hub. Training data url: N/A # Training code This is an optional link to the code used to train the model. Training code url: N/A # References He, Z., Dony, L., Fleck, J.S. et al. An integrated transcriptomic cell atlas of human neural organoids. Nature 635, 690–698 (2024). https://doi.org/10.1038/s41586-024-08172-8